Predicting site-binding modes of ions and water to nucleic acids using molecular solvation theory

GM Giambasu, DA Case, DM York - Journal of the American …, 2019 - ACS Publications
… molecular solvation theory and topological analysis that predicts cation and water site binding
to nucleic acids. 3D-RISM is shown to accurately capture alkali cations and water binding …

Transferable ion force fields in water from a simultaneous optimization of ion solvation and ionion interaction

P Loche, P Steinbrunner, S Friedowitz… - The Journal of …, 2021 - ACS Publications
… Figure 2 shows the solvation free energy for the four salts and the four water models. All …
water model has a negligible effect on the solvation free energies. Symbols show the solvation

Ions' motion in water

P Banerjee, B Bagchi - The Journal of chemical physics, 2019 - pubs.aip.org
… this coupling between the solute ion and solvent water. We discuss how ionic mobility in
water and other dipolar solvents are intimately connected to the dipolar solvation dynamics, in …

Dielectric characteristics, electrical conductivity and solvation of ions in electrolyte solutions

VV Shcherbakov, YM Artemkina, IA Akimova… - Materials, 2021 - mdpi.com
… with the processes of ion solvation. Water molecules in the solvation shells of ions lose their
… As a result, the water molecules in the solvation shells of ions reduce their ability to reorient …

Solvation structures in aqueous metal‐ion batteries

X Li, X Wang, L Ma, W Huang - Advanced Energy Materials, 2022 - Wiley Online Library
… in solvation structures in metal-ion batteries. First, the design principles of the solvation
of the solvation structure of metal ions, part of the water molecules will be removed from the …

Hybrid discrete‐continuum solvation methods

JR Pliego Jr, JM Riveros - Wiley Interdisciplinary Reviews …, 2020 - Wiley Online Library
… This study concluded that addition of one water molecule to the neutral and the ion in the
quantum mechanical calculations greatly improved agreement with experimental results. …

Investigation of ions hydration using molecular modeling

J Teychené, H Roux-de Balmann, L Maron… - Journal of Molecular …, 2019 - Elsevier
… of ions in pure water and in presence of counter-ion using a quantum mechanical method,
the Density Functional Theory (… ion and the water molecules, d, the ion solvation enthalpy, H …

Improving Performance of the SMD Solvation Model: Bondi Radii Improve Predicted Aqueous Solvation Free Energies of Ions and pKa Values of Thiols

S Mirzaei, MV Ivanov… - The Journal of Physical …, 2019 - ACS Publications
… models and the pK a values, is to explicitly include solvent molecules (most commonly,
water) into the calculation along with the implicit solvation model. Such a hybrid model (ie, …

Machine learning-guided approach for studying solvation environments

Y Basdogan, MC Groenenboom… - … of chemical theory …, 2019 - ACS Publications
… We initially hypothesized that solvation free energies will improve if we systematically add
explicit water molecules around each ion while ensuring that each microsolvated state is a …

The behavior of ions in water is controlled by their water affinity

KD Collins - Quarterly reviews of biophysics, 2019 - cambridge.org
… Although estimates vary, we shall assume that the solvation layer constitutes about two-thirds
of the solvent energy of interaction with the solute and the transition layer about one-third. …