Effects of cell cycle variability on lineage and population measurements of messenger RNA abundance
R Perez-Carrasco, C Beentjes… - Journal of the Royal …, 2020 - royalsocietypublishing.org
… a cell cycle description. Here, we derive a theory describing how messenger RNA (mRNA) …
influenced by stochasticity in the duration of the cell cycle and the timing of DNA replication. …
influenced by stochasticity in the duration of the cell cycle and the timing of DNA replication. …
[HTML][HTML] Genome-wide quantification of RNA flow across subcellular compartments reveals determinants of the mammalian transcript life cycle
… measurements of mRNA flow across the cell. We developed subcellular TimeLapse-seq to
measure the rates at which RNAs … cytoplasm in human and mouse cells. These rates varied …
measure the rates at which RNAs … cytoplasm in human and mouse cells. These rates varied …
Feedback from nuclear RNA on transcription promotes robust RNA concentration homeostasis in human cells
… a given gene per cell is variable between cells in a population ( … abundance variation for
most genes (Figure 1C). Moreover, mean … We also measured total RNA abundance using RNA …
most genes (Figure 1C). Moreover, mean … We also measured total RNA abundance using RNA …
Single-cell RNA-seq reveals a concomitant delay in differentiation and cell cycle of aged hematopoietic stem cells
L Hérault, M Poplineau, A Mazuel, N Platet, É Remy… - BMC biology, 2021 - Springer
… the lineage-primed clusters composed of low-abundant HSPCs … our computational cell cycle
classification that lineage-primed … with cell to cell variations due to cell cycle effect regressed …
classification that lineage-primed … with cell to cell variations due to cell cycle effect regressed …
Single-cell quantification of a broad RNA spectrum reveals unique noncoding patterns associated with cell types and states
… noncoding RNA throughout essential processes, such as cell cycle and lineage commitment
… that short, less abundant molecules, such as miRNAs (35), can be size-selected from a UMI-…
… that short, less abundant molecules, such as miRNAs (35), can be size-selected from a UMI-…
[HTML][HTML] Cell cycle expression heterogeneity predicts degree of differentiation
K Noller, P Cahan - bioRxiv, 2024 - ncbi.nlm.nih.gov
… time and cell fate potential by analyzing a lineage tracing … , the relative abundance of these
cells ranged from 0.008% to … neighborhood-wide variability in cell cycle gene expression …
cells ranged from 0.008% to … neighborhood-wide variability in cell cycle gene expression …
Inferring gene regulation from stochastic transcriptional variation across single cells at steady state
… leads to varied messenger RNA (mRNA) abundances for each … TF mRNA heterogeneity
across steady-state cell populations… correlations are measured—eg, at least one cell division. […
across steady-state cell populations… correlations are measured—eg, at least one cell division. […
Quantifying how post-transcriptional noise and gene copy number variation bias transcriptional parameter inference from mRNA distributions
… transcription measurements of the same gene. We find that: (i) correcting for cell cycle …
likelihood of observing the single cell mature mRNA numbers measured in a population of …
likelihood of observing the single cell mature mRNA numbers measured in a population of …
Hidden long-range memories of growth and cycle speed correlate cell cycles in lineage trees
… Here, we measure and analyze cell cycles in deep lineage … that control duration and variability
of the cell cycle. … MYCN-inhibited populations were established by incubating cells with 1 …
of the cell cycle. … MYCN-inhibited populations were established by incubating cells with 1 …
Global transcription regulation revealed from dynamical correlations in time-resolved single-cell RNA sequencing
… track the mRNA statistics over time along a single-cell lineage, … per cell cycle phase do not
scale with cell cycle progression (… cell size and age variability from technical noise effects on …
scale with cell cycle progression (… cell size and age variability from technical noise effects on …