Retrospective ensemble docking of allosteric modulators in an adenosine G-protein-coupled receptor

A Bhattarai, J Wang, Y Miao - Biochimica et Biophysica Acta (BBA)-General …, 2020 - Elsevier
ensemble docking of allosteric modulators to the A 1 AR, a prototypical GPCR. The ensemble
docking … 1 AR-Gi complex, flexible docking with AutoDock and compound scoring with the …

Probe confined dynamic mapping for G protein-coupled receptor allosteric site prediction

A Ciancetta, AK Gill, T Ding, DS Karlov… - ACS Central …, 2021 - ACS Publications
… P 2 Y 1 receptors in complex with allosteric modulators. (A–C) … in the allosteric binding sites
(retrospective analysis). We … (D) Docking pose of the UCB compound at the putative allosteric

Allosteric modulation of GPCRs: From structural insights to in silico drug discovery

M Persechino, JB Hedderich, P Kolb… - Pharmacology & …, 2022 - Elsevier
G protein-coupled receptors (GPCRs) play critical roles in … ligands (orthosteric site), allosteric
modulators offer new avenues for the … ensemble of the receptor in favor of active receptor

Multisite model of allosterism for the adenosine A1 receptor

G Deganutti, K Barkan, G Ladds… - Journal of Chemical …, 2021 - ACS Publications
… of approved drugs, G protein-coupled receptors (GPCRs) still … is the development of positive
allosteric modulators (PAMs) … term “macrostate”, we identify ensemble of configurations (“…

Application of Mixed-Solvent Molecular Dynamics Simulations for Prediction of Allosteric Sites on G ProteinCoupled Receptors

WKB Chan, HA Carlson, JR Traynor - Molecular Pharmacology, 2023 - ASPET
allosteric modulators acting at G proteincoupled receptors (… retrospectively to a test set of
five GPCRs (cannabinoid … is an adenosine nucleotide analog that binds to the receptor via …

Molecular simulations and drug discovery of adenosine receptors

J Wang, A Bhattarai, HN Do, S Akhter, Y Miao - Molecules, 2022 - mdpi.com
G protein-coupled receptors (GPCRs) represent the largest … to characterize molecular
basis of allosteric modulation [39]. … Extensive retrospective ensemble docking calculations of …

[HTML][HTML] Essential Dynamics Ensemble Docking for Structure-Based GPCR Drug Discovery

K McKay, NB Hamilton, JM Remington… - Frontiers in Molecular …, 2022 - frontiersin.org
… to target G protein-coupled receptors (GPCRs). While ensemble docking using multiple …
In this work, we have developed an original ensemble docking approach, which identifies …

Computer-aided GPCR drug discovery

J Wang, A Bhattarai, WI Ahmad, TS Farnan, KP John… - GPCRs, 2020 - Elsevier
G-protein-coupled receptors (GPCRs) are the largest superfamily of human … , receptor
ensemble docking, and experimental binding and functional assays, novel allosteric modulators

Conservation of allosteric ligand binding sites in G-protein coupled receptors

AE Wakefield, D Bajusz, D Kozakov… - Journal of chemical …, 2022 - ACS Publications
Allosteric modulation of G protein-coupled receptors … , adenosine A2A, and beta adrenergic
receptor structures … at the same location and thus provides (retrospective) support for our …

Insights into adenosine A2A receptor activation through cooperative modulation of agonist and allosteric lipid interactions

A Bruzzese, JAR Dalton, J Giraldo - PLoS computational biology, 2020 - journals.plos.org
… The importance of water for G protein-coupled receptors (… and positive allosteric modulators
of the β2-adrenergic receptor (… active receptor conformation at a functional level, we docked