GetPrimers: A generalized PCR‐based genetic targeting primer designer enabling easy and standardized targeted gene modification across multiple systems
Z Miao, H Wang, X Tu, Z Huang, S Huang, X Zhang… - Yeast, 2024 - Wiley Online Library
… of the homologous arms that it generates for recombination-… gene targeting is mainly for
targeting protein-coding genes as … These fragments were further integrated into an intermediate …
targeting protein-coding genes as … These fragments were further integrated into an intermediate …
CRISPR-based enrichment strategies for targeted sequencing
Z Schultzhaus, Z Wang, D Stenger - Biotechnology advances, 2021 - Elsevier
… Lower Left: Targeted amplification, or PCR-based techniques… favors the amplification of
high-abundance alleles in a mixed … Alternatively cleaved DNA can be integrated into long-read …
high-abundance alleles in a mixed … Alternatively cleaved DNA can be integrated into long-read …
CRISPR-based engineering of gene knockout cells by homology-directed insertion in polyploid Drosophila S2R+ cells
B Xia, G Amador, R Viswanatha, J Zirin, SE Mohr… - Nature protocols, 2020 - nature.com
… a homology-directed insertion method to knockout genes in the … study are listed in Table 1
(Integrated DNA Technologies) … using a PCR-based strategy without any need for sequencing. …
(Integrated DNA Technologies) … using a PCR-based strategy without any need for sequencing. …
Single-and duplex TaqMan-quantitative PCR for determining the copy numbers of integrated selection markers during site-specific mutagenesis in Toxoplasma gondii …
KPA Hänggeli, A Hemphill, N Müller, B Schimanski… - Plos one, 2022 - journals.plos.org
… , since these short homology flanking regions of 40 bps can … PCR-based quantification
(RT-qPCR), which allows a more … independent experiments targeting two different genes located …
(RT-qPCR), which allows a more … independent experiments targeting two different genes located …
[HTML][HTML] CRISPR-based strategies for targeted transgene knock-in and gene correction
… DNA break at the target intronic region, usually cleaving at 3 … genome targeting with a dual
surrogate reporter-integrated … in the mutant allele then are repaired through homologous …
surrogate reporter-integrated … in the mutant allele then are repaired through homologous …
Long-read sequencing for fast and robust identification of correct genome-edited alleles: PCR-based and Cas9 capture methods
… We compared PCR-based and nCATs targeted sequencing … to produce BAM files that
can be visualised in Integrative … black areas highlight the homology between the two alleles …
can be visualised in Integrative … black areas highlight the homology between the two alleles …
Expansion of the yeast modular cloning toolkit for CRISPR-based applications, genomic integrations and combinatorial libraries
… regions homologous to the desired genomic loci and the cassette is integrated by homologous
… (in parenthesis are the genes that the gRNAs of each plasmid are targeting): 3×_gRNA (…
… (in parenthesis are the genes that the gRNAs of each plasmid are targeting): 3×_gRNA (…
Identification of the distribution of human endogenous retroviruses K (HML-2) by PCR-based target enrichment sequencing
B Xue, T Zeng, L Jia, D Yang, SL Lin, LA Sechi… - Retrovirology, 2020 - Springer
… Sequences that showed homology to any of the reference … loci) are located in or within 2
kb of genes [16]. Most of the 35 … showed high amplification efficiency, and were not integrated …
kb of genes [16]. Most of the 35 … showed high amplification efficiency, and were not integrated …
PCR-based gene targeting in Hanseniaspora uvarum
… shorter homology regions were also sufficient for gene targeting. We chose the H. uvarum
LEU2 and LYS2 genes as targets to investigate PCR-based gene targeting … had integrated the …
LEU2 and LYS2 genes as targets to investigate PCR-based gene targeting … had integrated the …
Palindromic sequence-targeted (PST) PCR, version 2: an advanced method for high-throughput targeted gene characterization and transposon display
R Kalendar, AV Shustov, AH Schulman - Frontiers in plant science, 2021 - frontiersin.org
… target a range of homologous sequences, making the same set of SSPs suitable for GW with
a series of related species or genes… All PCR-based methods for GW are potentially sensitive …
a series of related species or genes… All PCR-based methods for GW are potentially sensitive …