A simple and effective genotyping workflow for rapid detection of CRISPR genome editing

L Wang, J Wang, D Feng, B Wang… - American Journal …, 2024 - journals.physiology.org
… Here, 20 using targeting the mouse trypsinogen genes as an … Traditionally, homologous
recombination in embryonic stem … 231 In this study, we established a PCR-based method to …

Efficient PCRbased gene targeting in isolates of the nonconventional yeast Debaryomyces hansenii

S Alhajouj, S Turkolmez, T Abalkhail, ZHO Alwan… - Yeast, 2023 - Wiley Online Library
… Gene targeting by homologous recombination has been … for the integrated expression of
heterologous genes in this … recombination requires long regions of homology to target sites and …

Long-range PCR-based NGS applications to diagnose mendelian retinal diseases

J Maggi, S Koller, L Bähr, S Feil… - International journal of …, 2021 - mdpi.com
… The entire regions of most target genes could be amplified … by variants that increase their
homologies, which is suggestive of a … The LR PCR products used in this study were generated

Systematic discovery of recombinases for efficient integration of large DNA sequences into the human genome

MG Durrant, A Fanton, J Tycko, M Hinks… - Nature …, 2023 - nature.com
… pads with methods such as homology-directed repair (HDR) … -targeting LSRs from our
pipeline, Pc01 and Enc9, integratedstrategy, we calculated the distance between target genes

Rapid Self-Selecting and Clone-Free Integration of Transgenes into Engineered CRISPR Safe Harbor Locations in Caenorhabditis elegans

ZC Stevenson… - G3: Genes …, 2020 - academic.oup.com
… To further increase the speed of generating transgenic lines, … with homology arms matching
the targeted genomic region … terminator were integrated into the target genome site as part of …

Genotyping Protocols for Genetically Engineered Mice

A Limaye, K Cho, B Hall, JS Khillan… - Current …, 2023 - Wiley Online Library
… to identify primers for PCR based on several search criteria … or designing donor DNA for
homology-directed repair (HDR), … may derive from any randomly integrated flox sequence. In …

Mouse gene-targeting strategies for maximum ease and versatility

VE Papaioannou, RR Behringer - Cold Spring Harbor …, 2024 - cshprotocols.cshlp.org
… types of alleles, we first consider general strategies and then … clones that have integrated
the gene-targeting vector is usually … a probe within the region of targeting vector homology (eg, …

Simultaneous loading of PCR-based multiple fragments on mouse artificial chromosome vectors in DT40 cell for gene delivery

K Yamazaki, K Matsuo, A Okada, N Uno, T Suzuki… - Scientific Reports, 2022 - nature.com
… Since nLA and nRA sequences are homologous to the … clones included the randomly
integrated clones in conditions such … appropriate for generating models of polymorphic genes like …

Optimized Cas9 expression systems for highly efficient Arabidopsis genome editing facilitate isolation of complex alleles in a single generation

J Ordon, M Bressan, C Kretschmer, L Dall'Osto… - Functional & integrative …, 2020 - Springer
… Summarizing, PCR-based isolation of large deletion alleles is feasible with the used … genes
in each linkage group share high sequence homology, and sgRNAs were designed to target

Dissecting protein function in vivo: engineering allelic series in mice using CRISPR-Cas9 technology

AM Cassidy, E Kuliyev, DB Thomas, H Chen… - Methods in …, 2022 - Elsevier
… template contains homology arms flanking the region to be … of the allele must include a
PCR-based genotyping strategy to … We typically order oligonucleotides from Integrated DNA …