Temporal-spatial analysis of the essentiality of hub proteins in protein-protein interaction networks
… of PPI networks: the static PPI network, the temporal dynamic … identified from different dynamic
PPI networks compared to … We have found that high noises in the PPI network distract us …
PPI networks compared to … We have found that high noises in the PPI network distract us …
A novel essential protein identification method based on PPI networks and gene expression data
J Zhong, C Tang, W Peng, M Xie, Y Sun, Q Tang… - BMC …, 2021 - Springer
… compared JDC with various essential protein prediction methods that are proposed base on
the static PPI network… In this study, we propose a new essential protein recognition algorithm …
the static PPI network… In this study, we propose a new essential protein recognition algorithm …
Identification of protein complexes and functional modules in E. coli PPI networks
P Kong, G Huang, W Liu - BMC microbiology, 2020 - Springer
… Experiments and data analysis (algorithmic model) are two effective … In this study, E. coli
protein complexes and … results of ELPA were compared with that of MCL, and we found that their …
protein complexes and … results of ELPA were compared with that of MCL, and we found that their …
Statistical analysis of functional genes in human PPI networks
J Lü, P Wang, J Lü, P Wang - … and Analysis of Bio-molecular Networks, 2020 - Springer
… compared the HPIN with that for the other species and found … of some functional genes,
which facilitate the identification of … protein interactions are unweighted and static [4,5,6,7,8,9,10,…
which facilitate the identification of … protein interactions are unweighted and static [4,5,6,7,8,9,10,…
Protein‐protein interaction networks as miners of biological discovery
… Across different types of PPI networks, the major difference is … in identifying hub genes
and modules within PPI networks. … to detect functional units from static PPI network, time-evolving …
and modules within PPI networks. … to detect functional units from static PPI network, time-evolving …
AMEND: active module identification using experimental data and network diffusion
SS Boyd, C Slawson, JA Thompson - BMC bioinformatics, 2023 - Springer
… , network analysis involving only PPI networks is limited when the goal is to study a particular
biological process, since they are static … was compared to other module identification …
biological process, since they are static … was compared to other module identification …
Inferring cell cycle phases from a partially temporal network of protein interactions
… , this method will allow the study of temporal regulation in … combined a static PPI network
built from KEGG pathway data … the static PPI network, we then defined its weight w AB (t) at time …
built from KEGG pathway data … the static PPI network, we then defined its weight w AB (t) at time …
Protein function module of deep learning and PPI network prediction
S Huo - Journal of Physics: Conference Series, 2020 - iopscience.iop.org
… functional modules were compared among the other three … the identified function module a
and the known function module … , most researchers are taking static PPI network for research, …
and the known function module … , most researchers are taking static PPI network for research, …
Providing SSPCO algorithm to construct static protein-protein interaction (PPI) networks
E Azarm, T Motamedi Nia, R Omidvar - Journal of Soft Computing in …, 2022 - jsoftcivil.com
… In this study, we substitute the random parameters in PSO with … by using gene expression
data is the identification of suitable … algorithms and it was compared with two basic methods of …
data is the identification of suitable … algorithms and it was compared with two basic methods of …
Protein interaction networks: Functional and statistical approaches
M Escandón, L Lamelas, V Roces… - … : Methods and Protocols, 2020 - Springer
… each group to identify differentially connected modules, which … used for the protein–protein
interaction analysis by STRING … that biological systems are static, nonhomogeneous dynamic …
interaction analysis by STRING … that biological systems are static, nonhomogeneous dynamic …