[HTML][HTML] Svante Pääbo, reader of the Neanderthal genome

K Wielgus, M Danielewski… - Acta Physiologica (Oxford …, 2023 - ncbi.nlm.nih.gov
… Additionally, the sequenced Neanderthal genome was used to detect genes … genome
was sequenced in 2008, while in 2010 appeared the first draft of the Neanderthal genome

A high-coverage Neandertal genome from Chagyrskaya Cave

F Mafessoni, S Grote, C De Filippo… - Proceedings of the …, 2020 - National Acad Sciences
… Patterns of variation in the genome suggest that her ancestors lived in relatively isolated …
When we analyze this genome together with two previously sequenced Neandertal genomes, …

[HTML][HTML] Reconstructing prehistoric viral genomes from Neanderthal sequencing data

RC Ferreira, GV Alves, M Ramon, F Antoneli… - Viruses, 2024 - mdpi.com
… of Neanderthals, and, therefore, the identification of viral genome remnants in Neanderthal
sequence … for viral remnants in sequence reads of Neanderthal genome data by mapping to …

[HTML][HTML] A genome sequence from a modern human skull over 45,000 years old from Zlatý kůň in Czechia

K Prüfer, C Posth, H Yu, A Stoessel… - Nature ecology & …, 2021 - nature.com
Modern humans expanded into Eurasia more than 40,000 years ago following their dispersal
out of Africa. These Eurasians carried ~2–3% Neanderthal ancestry in their genomes, …

Analysis of haplotypic variation and deletion polymorphisms point to multiple archaic introgression events, including from Altai Neanderthal lineage

O Taskent, YL Lin, I Patramanis, P Pavlidis… - Genetics, 2020 - academic.oup.com
… We found that introgressed haplotypes on average are closer to the Vindija Neanderthal
genome than to the Altai Neanderthal genome (Wilcoxon rank-sum test, W = 1.73 × 10 8 , P = …

The evolutionary history of Neanderthal and Denisovan Y chromosomes

M Petr, M Hajdinjak, Q Fu, E Essel, H Rougier… - Science, 2020 - science.org
… of modern human gene flow into Neanderthals appears to have been limited (13, 20, 21),
we demonstrate that the replacement of mtDNA and Y chromosomes in Neanderthals is highly …

Reconstructing the 3D genome organization of Neanderthals reveals that chromatin folding shaped phenotypic and sequence divergence

E McArthur, DC Rinker, EN Gilbertson, G Fudenberg… - Biorxiv, 2022 - biorxiv.org
… Because MHs interbred with many AH groups over the past 50,000 years, more than one-third
of the Neanderthal genome remains in introgressed sequences in MH genomes [15, 16]. …

[HTML][HTML] Tandem NBPF 3mer HORs (Olduvai triplets) in Neanderthal and two novel HOR tandem arrays in human chromosome 1 T2T-CHM13 assembly

M Glunčić, I Vlahović, M Rosandić, V Paar - Scientific Reports, 2023 - nature.com
… Here we investigate the structure of NBPF 3mer HORs in the Neanderthal genome assembly
of Pääbo et al., comparing it to the results obtained for human hg38.p14 chromosome 1. …

[HTML][HTML] Genetic insights into the social organization of Neanderthals

L Skov, S Peyrégne, D Popli, LNM Iasi, T Devièse… - Nature, 2022 - nature.com
… to other Neanderthals, we investigated the extent to which they share nucleotide variants
with the previously published high-quality Neanderthal genomes. All 13 newly sequenced

[HTML][HTML] The major genetic risk factor for severe COVID-19 is inherited from Neanderthals

H Zeberg, S Pääbo - Nature, 2020 - nature.com
Genomes Project 22 for this genomic region. We included all positions that are called in the
Neanderthal genomes … seen only once in the 1000 Genomes Project data. This resulted in …