The InterPro protein families and domains database: 20 years on
M Blum, HY Chang, S Chuguransky… - Nucleic acids …, 2021 - academic.oup.com
… InterPro combines signatures representing equivalent families, … for protein classification.
Founded in 1999, InterPro has become one of the most widely used resources for protein family …
Founded in 1999, InterPro has become one of the most widely used resources for protein family …
Pfam: The protein families database in 2021
J Mistry, S Chuguransky, L Williams… - Nucleic acids …, 2021 - academic.oup.com
… a database of protein families and domains that is widely used to analyse novel genomes, …
of unknown function (DUF) and uncharacterized protein families (UPF). Over time the …
of unknown function (DUF) and uncharacterized protein families (UPF). Over time the …
RefSeq: expanding the Prokaryotic Genome Annotation Pipeline reach with protein family model curation
W Li, KR O'Neill, DH Haft, M DiCuccio… - Nucleic acids …, 2021 - academic.oup.com
… In order to promote their use in contexts beyond PGAP, we have built the Protein Family
Models Entrez database, a database that contains HMMs, BlastRules and CDD architectures, …
Models Entrez database, a database that contains HMMs, BlastRules and CDD architectures, …
Dali server: structural unification of protein families
L Holm - Nucleic acids research, 2022 - academic.oup.com
… protein families for which no structural information existed. The Dali server for 3D protein …
, (ii) structural alignments are annotated with protein families. Using these new features, we …
, (ii) structural alignments are annotated with protein families. Using these new features, we …
[HTML][HTML] Role of structural and non-structural proteins and therapeutic targets of SARS-CoV-2 for COVID-19
… In this review, we primarily focus on genomic organization, structural and non-structural
protein components, and potential prospective molecular targets for development of therapeutic …
protein components, and potential prospective molecular targets for development of therapeutic …
PHROG: families of prokaryotic virus proteins clustered using remote homology
… of each protein family. The recent increase in sequenced viral genomes constitutes a great
… library of viral protein families generated using a new clustering approach based on remote …
… library of viral protein families generated using a new clustering approach based on remote …
The gasdermins, a protein family executing cell death and inflammation
… , we discuss the latest insights into gasdermin activation and regulation, the assembly of the
gasdermin pore and pyroptosis-related biological functions of the gasdermin protein family. …
gasdermin pore and pyroptosis-related biological functions of the gasdermin protein family. …
Glutathione S-transferase: a versatile protein family
… GSTs are a huge gene family of multidisciplinary functions. The GST protein family consists
of three members: cytosolic GSTs, mitochondrial GSTs, and microsomal GSTs. Among them, …
of three members: cytosolic GSTs, mitochondrial GSTs, and microsomal GSTs. Among them, …
PANTHER: Making genome‐scale phylogenetics accessible to all
PD Thomas, D Ebert, A Muruganujan… - Protein …, 2022 - Wiley Online Library
… Analysis THrough Evolutionary Relationships (PANTHER) is a publicly accessible
resource of information about the evolution of proteins and protein families, represented as …
resource of information about the evolution of proteins and protein families, represented as …
PANTHER version 16: a revised family classification, tree-based classification tool, enhancer regions and extensive API
H Mi, D Ebert, A Muruganujan, C Mills… - Nucleic acids …, 2021 - academic.oup.com
… protein families, and include all members of each family in 142 fully sequenced genomes. …
, high-level classification of the functions of proteins and protein families (1). On the PANTHER …
, high-level classification of the functions of proteins and protein families (1). On the PANTHER …
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