… sequencing (MPS) technology, whole-genome sequencing (… , optimization, and validation
of the WGS pipeline for genetic … A set of best practices were recommended using our pipeline…

… DNA sequencing methodologies today are the whole-genome sequencing (WGS) and
whole-exome sequencing … the variant calling, by using the MarkDuplicate command-line tool from …

… sequencing (NGS), offering cost-effective high precision data for a wide variety of applications
such as whole genome sequencing (… ), we configured MarkDuplicates to use a distance …

… and indels) in whole genome sequencing data that can be … Furthermore, we are introducing
additional optimizations on … of too many GC threads for MarkDuplicates is consistent with …

… Finally, so as to approximate “out of the box” use conditions, we made a minimal-effort
application of each program with no attempt at species-specific optimization. Had we optimized …

… genome sequencing (WGS) and whole exome sequencing (… this application similar to the
MarkDuplicate application. All … intensive parts of genomics pipelines, but availability of such …

… sequencing data [37]. It is constantly evolving with a diversity of performance optimization …
Duplicates were detected and removed using the Picard MarkDuplicates tool and read …

… increasing clinical application of whole genome sequencing (WGS) lead … pipelines with and
without the markduplicate step. Precision and recall values with or without the markduplicate …

… This section provides a short description of DNA sequence … stack that can be hard to optimize
for performance. However, … O access of DNA sequencing data files) and MarkDuplicate to …

… Parabricks was able to process a 50× whole-genome sequencing library in under 3 h and …
pipelines reduced runtimes even further to under 8 h with much faster BWA, MarkDuplicates, …