A survey on computational models for predicting proteinprotein interactions

L Hu, X Wang, YA Huang, P Hu… - Briefings in …, 2021 - academic.oup.com
data and the other is integrated models that consider the biological information of proteins
extracted from different sources. … a theoretical and systematic analysis on how to perform the …

[HTML][HTML] Reliable identification of protein-protein interactions by crosslinking mass spectrometry

S Lenz, LR Sinn, FJ O'Reilly, L Fischer… - Nature …, 2021 - nature.com
Source data are provided as a Source Data file. c Schematic … fraction may be crosslinked
in this analysis. In contrast, … PPI that includes a human or yeast protein is false. According to …

[HTML][HTML] Prediction of proteinprotein interaction using graph neural networks

K Jha, S Saha, H Singh - Scientific Reports, 2022 - nature.com
… high-throughput experimental methods such as Yeast two-hybrid … Apart from sequence-based
features, we have other sources of … This section analyzes the performance of the proposed …

Comprehensive characterization of proteinprotein interactions perturbed by disease mutations

F Cheng, J Zhao, Y Wang, W Lu, Z Liu, Y Zhou… - Nature …, 2021 - nature.com
interaction perturbations caused by somatic mutations may contribute to tumorigenesis.
Following this analysis, … were then extracted, purified and transformed into Y8930 yeast strain for …

[HTML][HTML] Yeastyeast interactions: mechanisms, methodologies and impact on composition

F Bordet, A Joran, G Klein, C Roullier-Gall… - Microorganisms, 2020 - mdpi.com
… Non-volatile and volatile metabolomics, as well as sensory analysis … A key point is nitrogen
source quality since ammonium and … made it possible to attribute a certain regulation of yeast

[HTML][HTML] Yeast protein as an easily accessible food source

ME Jach, A Serefko, M Ziaja, M Kieliszek - Metabolites, 2022 - mdpi.com
… nutritional sources of protein. Obtaining single cell proteins from yeast cells obtained from
… [72] proved that optimalization culture conditions and medium constitution using analysis of …

Environmental robustness of the global yeast genetic interaction network

M Costanzo, J Hou, V Messier, J Nelson, M Rahman… - Science, 2021 - science.org
… environments, including an alternative carbon source, … array of single mutants to SGA analysis
using a neutral (control) “… We conclude that the yeast genetic interaction map derived from …

The BioGRID database: A comprehensive biomedical resource of curated protein, genetic, and chemical interactions

R Oughtred, J Rust, C Chang, BJ Breitkreutz… - Protein …, 2021 - Wiley Online Library
database available for yeast researchers to explore and analyze protein and gene interaction
… set of fields that allow interoperability between multiple resources, as well as a standard …

Cross-linking mass spectrometry for investigating protein conformations and proteinprotein interactions─ a method for all seasons

L Piersimoni, PL Kastritis, C Arlt, A Sinz - Chemical Reviews, 2021 - ACS Publications
analysis of purified proteins to the broad interrogation of system-wide protein interaction
to perform a computational analysis remains, so far, to map the cross-links obtained from XL-…

[HTML][HTML] Classification and prediction of proteinprotein interaction interface using machine learning algorithm

S Das, S Chakrabarti - Scientific reports, 2021 - nature.com
… thousands of interactions, which are regularly used in network based ‘omics’ data analysis.
… for biologists to evaluate proteinprotein docking derived results and gain helpful knowledge …