A survey on computational models for predicting protein–protein interactions
… data and the other is integrated models that consider the biological information of proteins
extracted from different sources. … a theoretical and systematic analysis on how to perform the …
extracted from different sources. … a theoretical and systematic analysis on how to perform the …
[HTML][HTML] Reliable identification of protein-protein interactions by crosslinking mass spectrometry
… Source data are provided as a Source Data file. c Schematic … fraction may be crosslinked
in this analysis. In contrast, … PPI that includes a human or yeast protein is false. According to …
in this analysis. In contrast, … PPI that includes a human or yeast protein is false. According to …
[HTML][HTML] Prediction of protein–protein interaction using graph neural networks
… high-throughput experimental methods such as Yeast two-hybrid … Apart from sequence-based
features, we have other sources of … This section analyzes the performance of the proposed …
features, we have other sources of … This section analyzes the performance of the proposed …
Comprehensive characterization of protein–protein interactions perturbed by disease mutations
… interaction perturbations caused by somatic mutations may contribute to tumorigenesis.
Following this analysis, … were then extracted, purified and transformed into Y8930 yeast strain for …
Following this analysis, … were then extracted, purified and transformed into Y8930 yeast strain for …
[HTML][HTML] Yeast–yeast interactions: mechanisms, methodologies and impact on composition
F Bordet, A Joran, G Klein, C Roullier-Gall… - Microorganisms, 2020 - mdpi.com
… Non-volatile and volatile metabolomics, as well as sensory analysis … A key point is nitrogen
source quality since ammonium and … made it possible to attribute a certain regulation of yeast …
source quality since ammonium and … made it possible to attribute a certain regulation of yeast …
[HTML][HTML] Yeast protein as an easily accessible food source
ME Jach, A Serefko, M Ziaja, M Kieliszek - Metabolites, 2022 - mdpi.com
… nutritional sources of protein. Obtaining single cell proteins from yeast cells obtained from
… [72] proved that optimalization culture conditions and medium constitution using analysis of …
… [72] proved that optimalization culture conditions and medium constitution using analysis of …
Environmental robustness of the global yeast genetic interaction network
… environments, including an alternative carbon source, … array of single mutants to SGA analysis
using a neutral (control) “… We conclude that the yeast genetic interaction map derived from …
using a neutral (control) “… We conclude that the yeast genetic interaction map derived from …
The BioGRID database: A comprehensive biomedical resource of curated protein, genetic, and chemical interactions
R Oughtred, J Rust, C Chang, BJ Breitkreutz… - Protein …, 2021 - Wiley Online Library
… database available for yeast researchers to explore and analyze protein and gene interaction
… set of fields that allow interoperability between multiple resources, as well as a standard …
… set of fields that allow interoperability between multiple resources, as well as a standard …
Cross-linking mass spectrometry for investigating protein conformations and protein–protein interactions─ a method for all seasons
L Piersimoni, PL Kastritis, C Arlt, A Sinz - Chemical Reviews, 2021 - ACS Publications
… analysis of purified proteins to the broad interrogation of system-wide protein interaction …
to perform a computational analysis remains, so far, to map the cross-links obtained from XL-…
to perform a computational analysis remains, so far, to map the cross-links obtained from XL-…
[HTML][HTML] Classification and prediction of protein–protein interaction interface using machine learning algorithm
S Das, S Chakrabarti - Scientific reports, 2021 - nature.com
… thousands of interactions, which are regularly used in network based ‘omics’ data analysis.
… for biologists to evaluate protein–protein docking derived results and gain helpful knowledge …
… for biologists to evaluate protein–protein docking derived results and gain helpful knowledge …