… of splicing phenotypes within the splicing quantification task … the splicing ratio from a set
of features associated with cell-… By default in brie-quant, we filter out events with (1) less than …

… of splicing phenotypes within the splicing quantification task itself… the splicing ratio from a set
of features associated with cell-… By default in brie-quant, we filter out events with 1) less than …

… single cells tend to express one major transcript variant of a gene, and the diversity of transcript
variants in cell … Therefore, we believe that BRIE is not suitable for testing the cell model …

… Figure 1 Alternative splicing and gene regulatory network profiles of pancreatic islet … BRIE:
transcriptome-wide splicing quantification in single cells. Genome Biol 18, 123. Lee, Y., and …

… the first time, characterization of transcriptome-wide exon-level alternative splicing events at
the … In addition to characterizing exclusion and inclusion rates across identical cells, BRIE is …

… analyze splicing dynamics at single-cell resolution. Here, we present MARVEL, a comprehensive
R package for single-cell splicing analysis … For BRIE, differential splicing analysis was …

… , BRIE 18 (for single-cell data) and Expedition 19 (for single-… each single cell, generating
an AS probability matrix representing the transcriptome-wide landscape of splicing at single-cell …

… However, BRIE requires performing a pairwise comparison between every two … a single
cell dataset from CRC patients. Thus, systematic evaluation of differential splicing across T cells …

… Transcriptome-wide association study (TWAS) was then used to verify the results at the DNA
level. Finally, brain imaging GWAS was used to explore the brain functional areas related to …

… for characterization of spliced isoforms in single cells, such as Expedition [63], BRIE [64] …
heterogeneity in APA isoform usages on a transcriptome-wide scale. scAPAtrap proposed in this …