A review on recent advances in methods for site-directed spin labeling of long RNAs
K Huang, X Fang - International Journal of Biological Macromolecules, 2023 - Elsevier
… is inherently more flexible, which makes some well-established techniques for structural
determination of proteins, such as X-ray crystallography (XRC) and cryo-electron microscopy (…
determination of proteins, such as X-ray crystallography (XRC) and cryo-electron microscopy (…
Synthesis of DNA and RNA containing rigid spin-and fluorescent labels for studies by EPR and fluorescence spectroscopies
ALJ Segler - 2021 - opinvisindi.is
… problem associated with spin-labeling by chemical synthesis of … label Çm into RNA with
quantitative spin-labeling efficiency. … and their spin labeling efficiency was determined by spin-…
quantitative spin-labeling efficiency. … and their spin labeling efficiency was determined by spin-…
Advancements in site-directed incorporation of rigid spin-labels into nucleic acids
HY Júlíusson - 2020 - opinvisindi.is
… in nitroxide spin-labeling of nucleic acids for structure determination using rigid … spin-labeling
of duplex DNA and RNA containing abasic sites. No specific binding was observed for RNA…
of duplex DNA and RNA containing abasic sites. No specific binding was observed for RNA…
Preparation of site-specifically spin-labeled RNA by in vitro transcription using an expanded genetic alphabet
L Bornewasser, S Kath-Schorr - DNAzymes: Methods and Protocols, 2022 - Springer
… Depending on the desired positions for spin labeling within the RNA sequence of interest, …
Determine the concentration of cleaned spin-labeled RNA by measuring the absorption at …
Determine the concentration of cleaned spin-labeled RNA by measuring the absorption at …
The 'hidden side'of spin labelled oligonucleotides: Molecular dynamics study focusing on the EPR-silent components of base pairing
… used to determine the structural properties of deoxyribonucleic acid (DNA), ribonucleic acid
(… In this work, we performed extensive MD simulations of RNA structures with either N T (N = …
(… In this work, we performed extensive MD simulations of RNA structures with either N T (N = …
Spin labeling of long RNAs via click reaction and enzymatic ligation
… Moreover, it sets the path to label, for example, long riboswitches, ribozymes, and
DNAzymes for coarse-grained structure determination and enables to investigate mechanistical …
DNAzymes for coarse-grained structure determination and enables to investigate mechanistical …
A carbazole-derived nitroxide that is an analogue of cytidine: a rigid spin label for DNA and RNA
ALJ Segler, ST Sigurdsson - The Journal of Organic Chemistry, 2021 - ACS Publications
… DPAGE, the spin-labeling efficiency was determined (Figure … DNA and RNA, respectively,
with high spin-labeling efficiency… are nonperturbing of duplex structures. These new rigid spin …
with high spin-labeling efficiency… are nonperturbing of duplex structures. These new rigid spin …
2′-Alkynyl spin-labelling is a minimally perturbing tool for DNA structural analysis
JS Hardwick, MM Haugland… - Nucleic Acids …, 2020 - academic.oup.com
… Efforts to obtain well-diffracting crystals of the 5 U analogue duplex 5 were unsuccessful;
however, we could determine the structure of the related single spin-labelled duplex 7 (Figure …
however, we could determine the structure of the related single spin-labelled duplex 7 (Figure …
[HTML][HTML] Synthesis of nucleobase-modified RNA oligonucleotides by post-synthetic approach
K Bartosik, K Debiec, A Czarnecka, E Sochacka… - Molecules, 2020 - mdpi.com
… active esters was utilized for RNA site-specific spin labeling with nitroxide radicals for EPR
… To determine the effect of hydantoin structure on the biological activity of tRNAs, model 17-…
… To determine the effect of hydantoin structure on the biological activity of tRNAs, model 17-…
Studying Ribozymes with Electron Paramagnetic Resonance Spectroscopy
O Schiemann - Ribozymes, 2021 - Wiley Online Library
… by a section on site-directed spin labeling of RNA, and then several examples are summarized
… Base-specific spin-labeling of RNA for structure determination. Nucleic Acids Res. 35 (9): …
… Base-specific spin-labeling of RNA for structure determination. Nucleic Acids Res. 35 (9): …