Linking genetic markers and crop model parameters using neural networks to enhance genomic prediction of integrative traits

F Larue, L Rouan, D Pot, JF Rami, D Luquet… - Frontiers in Plant …, 2024 - frontiersin.org
… E ivt the residual error for variety v in replicate i of treatment t. … (A), Bayes C (B) or CNN (C)
compared to the direct genomic … non-linear relationships between traits and between CGM …

Multi-trait and multi-environment genomic prediction for flowering traits in maize: a deep learning approach

F Mora-Poblete, C Maldonado, L Henrique… - Frontiers in Plant …, 2023 - frontiersin.org
Maize (Zea mays L.), the third most widely cultivated cereal … If R0 is the residual covariance
for more than one trait, then R … adjusting the weights that connect the layers to optimize the …

[HTML][HTML] Genome-wide prediction in a hybrid maize population adapted to Northwest China

G Li, Y Dong, Y Zhao, X Tian, T Würschum, J Xue… - The Crop Journal, 2020 - Elsevier
… ranged from 0.386 to 0.794 across traits and models. Six parametric … Increasing maize (Zea
mays L.) yield is one of the most … implementing various genomic relationships in regressions. …

Decoding the genetic basis of ear‐related traits in maize (Zea mays L.) using linkage mapping, association mapping and genomic prediction

L Chang, K He, J Liu - Plant Breeding - Wiley Online Library
… , X and Z are known design matrices and ε is a random residualGenome-wide association
study was carried out in each … It was not difficult to draw the conclusion that bin7.03/7.04 was …

Leveraging prior biological knowledge improves prediction of tocochromanols in maize grain

R Tanaka, D Wu, X Li, LE Tibbs‐Cortes… - … Plant Genome, 2023 - Wiley Online Library
… most abundant tocochromanols in maize (Zea mays L.) grain is … trait) within and between
two panels of 1,462 and 242 maize … field experiments, residual covariance was assumed to be …

Physiological adaptive traits are a potential allele reservoir for maize genetic progress under challenging conditions

C Welcker, NA Spencer, O Turc, I Granato… - Nature …, 2022 - nature.com
… of examining causal links between the changes in alleles, traits, and … and Bayesian networks,
and (iv) investigated if genomic … G year residual represents the proportion of the variance …

Modeling multiple phenotypes in wheat using data‐driven genomic exploratory factor analysis and Bayesian network learning

M Momen, M Bhatta, W Hussain, H Yu, G Morota - Plant Direct, 2021 - Wiley Online Library
… into a Bayesian network to obtain a trait structure reflecting … of additive genetic effect and
residuals, respectively, and ⊗ is the … phenotyping data, where relationships within image-based …

Using single‐plant‐omics in the field to link maize genes to functions and phenotypes

DF Cruz, S De Meyer, J Ampe, H Sprenger… - Molecular Systems …, 2020 - embopress.org
… to genomic prediction to associate genes to plant traits, in … field‐grown maize plants of the
same inbred line (Zea mays B104), … that residual non‐linear laboratory or genotype effects may

[HTML][HTML] Genome‐wide association analysis of hyperspectral reflectance data to dissect the genetic architecture of growth‐related traits in maize under plant growth …

RM Yassue, G Galli, CPJ Chen, R Fritsche‐Neto… - Plant Direct, 2023 - ncbi.nlm.nih.gov
… We employed Bayesian whole‐genome GWA methods to … 2 are the additive genomic and
residual variances, respectively… Root size and nitrogen‐uptake activity in two maize (Zea mays) …

Mapping heat tolerance QTLs and incorporating environmental information to improve genomic prediction in Maize

JP McNellie - 2022 - search.proquest.com
… studies to reduce the genomic region controlling a trait of interest to … Maize (Zea mays L.) is
a major source of calories and biofuel, … index from CERIS to connect the observed phenotypic …