[HTML][HTML] MiRNA-Mediated Subpathway Identification and Network Module Analysis to Reveal Prognostic Markers in Human Pancreatic Cancer
Y Liu, Y Cui, X Bai, C Feng, M Li, X Han, B Ai… - Frontiers in …, 2020 - frontiersin.org
… Pathway analysis is the first choice to gain insight into biological processes and understand
… developed time-vaRying enriCHment integrOmics Subpathway aNalysis tOol (CHRONOS) …
… developed time-vaRying enriCHment integrOmics Subpathway aNalysis tOol (CHRONOS) …
mirTime: identifying condition-specific targets of microRNA in time-series transcript data using Gaussian process model and spherical vector clustering
… From the gene set enrichment analysis, we found that 83 of the 132 genes belong to the ‘protein
binding’ (GO: 0005515, P-value: 1.3E-5) and 41 genes belong to ‘extracellular exosome…
binding’ (GO: 0005515, P-value: 1.3E-5) and 41 genes belong to ‘extracellular exosome…
Pathway Analysis for unraveling Complex Diseases: Current State and Future Perpectives
… emerging subpathway analysis field while we identify major challenges that the next generation
of methods … by the tools named Graphite [39], Subpathway-GM [38], and CHRONOS [40]. …
of methods … by the tools named Graphite [39], Subpathway-GM [38], and CHRONOS [40]. …
Identification of differentially expressed subpathways via a bilevel consensus scoring of network topology and gene expression
… subpathway analysis method to identify differentially expressed … A recent trend in pathway
analysis is to consider localized … , “CHRONOS: a time-varying method for microRNA-mediated …
analysis is to consider localized … , “CHRONOS: a time-varying method for microRNA-mediated …
A systems biology approach for the identification of active molecular pathways during the progression of Alzheimer's disease
AG Vrahatis, IS Kotsireas, P Vlamos - GeNeDis 2018: Computational …, 2020 - Springer
… Our proposed approach is based on the emerging fourth generation of pathway analysis,
the subpathway analysis, by using … CHRONOS makes assumptions in order to convert the …
the subpathway analysis, by using … CHRONOS makes assumptions in order to convert the …
Identifying Network Biomarkers for Alzheimer's Disease Using Single-Cell RNA Sequencing Data
I Aslanis, MG Krokidis, GN Dimitrakopoulos… - Worldwide Congress on …, 2022 - Springer
… -perturbed subpathways within a pathway network… pathway analysis detection [34,35,36].
Of note, in recent literature, the focus has shifted from pathway analysis to subpathway analysis…
Of note, in recent literature, the focus has shifted from pathway analysis to subpathway analysis…
Detecting Active Molecular Subpathways Related to Alzheimer's Disease: A Systems Biology Approach
AG Vrahatis, P Vlamos - Handbook of Computational Neurodegeneration, 2023 - Springer
… Methodological Steps of Pathway Analysis Biological pathway analysis is a set of Systems
Biology techniques that are used to extract knowledge from high-throughput sequencing data …
Biology techniques that are used to extract knowledge from high-throughput sequencing data …
A Systems Biology Approach for Detecting Active Molecular Subpathways Related to Alzheimer's Disease
AG Vrahatis, P Vlamos - Handbook of Computational Neurodegeneration, 2021 - Springer
… Methodological Steps of Pathway Analysis Biological pathway analysis is a set of Systems
Biology techniques that are used to extract knowledge from high-throughput sequencing data …
Biology techniques that are used to extract knowledge from high-throughput sequencing data …
[HTML][HTML] Identification of informative genes and sub-pathways using Improved Differential Expression Analysis for Pathways (iDEAP) for cancer classification
NA Nasarudin, MS Mohamad, Z Zakaria… - …, 2023 - f1000research.com
… sub-pathway-based analysis method, that identifies a local region perturbed by complex
diseases based on larger pathway … expression analysis for the pathway (iDEAP) method which …
diseases based on larger pathway … expression analysis for the pathway (iDEAP) method which …
Network biomarkers for Alzheimer's disease via a graph-based approach
AG Vrahatis, P Vlamos, M Gonidi… - 2020 5th South-East …, 2020 - ieeexplore.ieee.org
… biological hypothesis of CHRONOS package [29]. Metabolic pathway maps include enzyme
… enrichment analysis to highlight the most relevant terms associated with a given gene list. …
… enrichment analysis to highlight the most relevant terms associated with a given gene list. …