[PDF][PDF] Seeing Beyond the Blot: A Critical Look at Assumptions and Raw

MS DeNies, AP Liu, S Schnell - researchgate.net
… mechanisms remains primarily semi-quantitative. 56 … that can influence Western blot
analysis and 79 interpretation… like ImageJ can aid in the detection of signal 122 saturation. …

Immunostaining-based detection of dynamic alterations in red blood cell proteins

M Grau, L Kuck - JoVE (Journal of Visualized Experiments), 2023 - jove.com
… ) proteins is a commonly used, semi-quantitative method to … RBC using the Oval selection
tool within the ImageJ software. … obtained primary antibodies (eg, western blot). First, a primary …

Method for detecting acetylated PD-L1 in cell lysates by immunoprecipitation and western blot analysis

F Middleton-Davis, A Davis, K Middleton - PloS one, 2022 - journals.plos.org
… Here we present a modified protocol of Horita et al. [3]. The … The method described here is
simple, semi-quantitative and … quantitated by densitometry using imageJ software and levels …

Study of the functions and activities of neuronal K-Cl co-transporter KCC2 using western blotting

SS Josiah, NFM Azlan, A Oguro-Ando… - JoVE (Journal of Visualized …, 2022 - jove.com
… Band intensities were quantified with ImageJ software. ***p < 0.001; **p < 0.01; … western
blot technique is only able to produce semi-quantitative data, which means that the technique

Multimodal detection of protein isoforms and nucleic acids from low starting cell numbers

E Rosàs-Canyelles, AJ Modzelewski, AEG Martinez… - Lab on a Chip, 2021 - pubs.rsc.org
… , mRNA and protein isoform immunoblotting measurements (… Cells were manually counted
in ImageJ using overlay … expression using semi-quantitative real-time PCR analysis (semi-RT-…

Quantitative proteomic studies of fast endophilin-mediated endocytosis and motor neuron degeneration

S Subramaniam - 2021 - eprints.bbk.ac.uk
protein was roughly proportional to its abundance. A popular iteration of this method known
as Exponentially Modified Protein … lane were obtained using ImageJ gel analysis tools. The …

Quantitative fragmentomics allow affinity mapping of interactomes

G Gogl, B Zambo, C Kostmann, A Cousido-Siah… - nature …, 2022 - nature.com
… human PDZ-proteins were undetected by the MS approach, we used western blot to further
… splicing, post-translational modifications, or binding to third-party proteins or other ligands. …

Analysis of the Mouse Hepatic Peroxisome Proteome—Identification of Novel Protein Constituents Using a Semi-Quantitative SWATH-MS Approach

Ö Singin, A Astapenka, V Costina, S Kühl, N Bonekamp… - Cells, 2024 - mdpi.com
… with Fiji ImageJ, using automated thresholding and the “analyze … In summary, the results from
the immunoblots reveal that both … , work and computation. Thus, we explored an alternative …

A novel mechanism for NF-κB-activation via IκB-aggregation: implications for hepatic mallory-denk-body induced inflammation

Y Liu, MJ Trnka, S Guan, D Kwon, DH Kim… - Molecular & Cellular …, 2020 - ASBMB
… Additionally, we identified 10 proteins that interact with IκBα under baseline conditions,
aggregate upon ZnPP-treatment, and maintain the interaction with IκBα after ZnPP-treatment, …

Stop codon read-through of mammalian MTCH2 leading to an unstable isoform regulates mitochondrial membrane potential

LE Manjunath, A Singh, S Sahoo, A Mishra… - Journal of Biological …, 2020 - ASBMB
… MTCH2, which encodes a mitochondrial protein that regulates mitochondrial metabolism,
was selected as a … This study also suggests that AQP4ex plays a role in neuromyelitis optica ( …