European maize genomes highlight intraspecies variation in repeat and gene content
… Numerous large structural variations (SV) in maize have been … versus dent genomes we
generated pairwise whole-genome … the six maize genomes, SABs were connected to MABs if …
generated pairwise whole-genome … the six maize genomes, SABs were connected to MABs if …
A platinum standard pan-genome resource that represents the population structure of Asian rice
… The amount of genome sequences with structural variation between any two varieties ranged
from 17.57 Mb to 41.54 Mb for those belonging to the indica (XI) varietal group (avg: 31.75 …
from 17.57 Mb to 41.54 Mb for those belonging to the indica (XI) varietal group (avg: 31.75 …
[HTML][HTML] The omnigenic model and polygenic prediction of complex traits
I Mathieson - The American Journal of Human Genetics, 2021 - cell.com
… This fundamentally affects the way in which selection operates on complex traits, and … very
difficult to detect. It is often assumed that the response to selection on highly polygenic traits is …
difficult to detect. It is often assumed that the response to selection on highly polygenic traits is …
Massive gene presence-absence variation shapes an open pan-genome in the Mediterranean mussel
… hemizygous genomic regions affected by structural variants, … not included in the reference
genome assembly. As such, this … of studies connected gene presence-absence variation (PAV…
genome assembly. As such, this … of studies connected gene presence-absence variation (PAV…
GENESPACE tracks regions of interest and gene copy number variation across multiple genomes
… , copynumber, and structural variation at three levels of … genetic basis of complex traits:
studying variation caused by … ancestry to a single gene in the outgroup, thus connecting the maize …
studying variation caused by … ancestry to a single gene in the outgroup, thus connecting the maize …
[HTML][HTML] Pan-genome of wild and cultivated soybeans
Y Liu, H Du, P Li, Y Shen, H Peng, S Liu, GA Zhou… - Cell, 2020 - cell.com
… reads onto a single reference genome. The structural variations from the 2,898 accessions
that were genotyped based on the graph-based genome and the RNA sequencing (RNA-seq…
that were genotyped based on the graph-based genome and the RNA sequencing (RNA-seq…
Genetic prediction of complex traits with polygenic scores: a statistical review
… of complex traits can facilitate disease screening, improve early intervention, and aid in the
development of personalized medicine. Genetic prediction of complex traits … We connect the …
development of personalized medicine. Genetic prediction of complex traits … We connect the …
The past, present, and future of maize improvement: domestication, genomics, and functional genomic routes toward crop enhancement
… and can be used for crop improvement. Finally, we provide some perspectives on future
directions regarding functional genomics research and the breeding of maize and other crops. …
directions regarding functional genomics research and the breeding of maize and other crops. …
Genomics of evolutionary novelty in hybrids and polyploids
G Nieto Feliner, J Casacuberta, JF Wendel - Frontiers in genetics, 2020 - frontiersin.org
… of structural variants in a novel genomic context. … Partial solutions to the G-to-P equation are
provided for some complex traits … Here our attention is directed at the connections, known or …
provided for some complex traits … Here our attention is directed at the connections, known or …
Engineering drought and salinity tolerance traits in crops through CRISPR-mediated genome editing: Targets, tools, challenges, and perspectives
… of complex traits for crop improvement. This review provides a synopsis of plant responses
to … -environment interactions on genetic adaptations, improving crop yields, linking plant …
to … -environment interactions on genetic adaptations, improving crop yields, linking plant …