Cross-species convergence of brain transcriptomic and epigenomic findings in posttraumatic stress disorder: A systematic review

DL Núñez-Rios, JJ Martínez-Magaña… - Complex …, 2023 - karger.com
… Brain region-specific analysis revealed that inflammatory responses, neurogenesis, and
synaptic plasticity were activated during the early response to trauma but inhibited during the …

[HTML][HTML] Epigenomics of rats' liver and its cross-species functional annotation reveals key regulatory genes underlying short term heat-stress response

J Dou, H Luo, A Sammad, W Lou, D Wang, F Schenkel… - Genomics, 2022 - Elsevier
… Thus, it is impossible to explore the regulatory mechanism of heat stress … regulatory mechanism
of heat stress from the perspective of transcriptome (mRNA expression) and epigenome (…

[HTML][HTML] Cross-species metabolomic analysis identifies uridine as a potent regeneration promoting factor

Z Liu, W Li, L Geng, L Sun, Q Wang, Y Yu, P Yan… - Cell discovery, 2022 - nature.com
… the genome-wide transcriptomic analysis with a focus on … This analysis revealed that within
each super-pathway, specific … response by constructing a single-nucleus transcriptomic atlas …

[HTML][HTML] Species-specificity of transcriptional regulation and the response to lipopolysaccharide in mammalian macrophages

SJ Bush, MEB McCulloch, ZM Lisowski… - Frontiers in Cell and …, 2020 - frontiersin.org
… The analysis reveals a conserved transcription factor … of the transcriptomic response of
sheep BMDM to LPS. Detailed … To extend the cross-species comparison, we downloaded …

Cross-species integration of single-cell RNA-seq resolved alveolar-epithelial transitional states in idiopathic pulmonary fibrosis

KY Huang, E Petretto - American Journal of Physiology …, 2021 - journals.physiology.org
… and cross-species single-cell transcriptomics analyses allowed us to … scRNA-seq analysis
reveals gene expression profiles of … bleomycin injury and peaked during the fibrotic response

Cross-species analysis of transcriptome emphasizes a critical role of TNF-α in mediating MAP2K7/AKT2 signaling in zearalenone-induced apoptosis

FL Zhang, KX Zhu, JY Wang, M Zhang, JM Yan… - Journal of Hazardous …, 2023 - Elsevier
damage caused by ZEN exposure on ovarian granulosa cells. Comparative transcriptome
analysis … Cluster analysis revealed differences in the effect of ZEN on pGCs and mGCs, as the …

[HTML][HTML] A cross-species analysis of systemic mediators of repair and complex tissue regeneration

J Losner, K Courtemanche, JL Whited - NPJ Regenerative Medicine, 2021 - nature.com
… of regeneration and wound healing because they modulate both local and global responses
to injury and help to coordinate injury response with development in immature organisms. …

[HTML][HTML] Transcriptome analysis of the response provided by Lasiopodomys mandarinus to severe hypoxia includes enhancing DNA repair and damage prevention

Q Dong, Z Wang, M Jiang, H Sun, X Wang, Y Li… - Frontiers in …, 2020 - Springer
… the responses of subterranean rodents to severe hypoxia, we performed a cross-species
brain transcriptomic analysis … (KEGG) pathway analysis revealed that upregulated DEGs in L. …

[HTML][HTML] Distinctive gene expression patterns and imprinting signatures revealed in reciprocal crosses between cattle sub-species

R Liu, R Tearle, WY Low, T Chen, D Thomsen… - BMC genomics, 2021 - Springer
… This study investigated the transcriptome of the placenta and four somatic tissues at mid-…
These are key hormones that regulate a variety of physiologic responses to stress through …

Cross-species analysis of enhancer logic using deep learning

L Minnoye, II Taskiran, D Mauduit, M Fazio… - Genome …, 2020 - genome.cshlp.org
… (MEL) state, by exploiting both cross-species data and machine learning. Although the … a
transcriptomic and epigenomic level, the combinatorial code of binding sites of their regulatory