Metabolic systems biology and multi-omics of cyanobacteria: Perspectives and future directions

R Pathania, A Srivastava, S Srivastava, P Shukla - Bioresource Technology, 2022 - Elsevier
PCC 7002 found 410 phosphorylation sites on phosphoproteins participating in crucial
molecular methods such as … CyanOmics is a database for integrated omics of Synechococcus sp. …

CyanoOmicsDB: an integrated omics database for functional genomic analysis of cyanobacteria

P Zhou, L Wang, H Liu, C Li, Z Li, J Wang… - Nucleic Acids …, 2022 - academic.oup.com
… Compared with CyanOmics that collects several transcriptome and proteome datasets for
Synechococcus sp. PCC 7002, CyanoOmicsDB integrates more omics datasets for sequenced …

Database resources for cyanobacterial research

A Kumar, PK Arya - Advances in Cyanobacterial Biology, 2020 - Elsevier
… have been done on Synechococcus species PCC 7002 cells under different conditions.
CyanOmics database aggregates results of omics studies on this cyanobacterium species. This …

[PDF][PDF] A hybrid flux balance analysis and machine learning pipeline elucidates metabolic adaptation in cyanobacteria

S Vijayakumar, PKSM Rahman, C Angione - Iscience, 2020 - cell.com
… -specific GSMMs of Synechococcus sp. PCC 7002 are generated by integrating omics
data, and three pairs of objectives are optimized for each condition-specific model. (4) Bilevel …

[图书][B] Decomposition of Synechococcus elongatus Transcriptomic Data to Reveal Its Regulatory Modules Through Independent Component Analysis

T Al Bulushi - 2021 - search.proquest.com
… “Machine learning reveals the transcriptional regulatory network and circadian dynamics
of the cyanobacteria Synechococcus elongatus PCC 7942”. The thesis author is the primary …

CyanoMapDB: a database integrating experimentally validated protein–protein interactions in cyanobacteria

Z Peng, J Li, X Jiang, C Wan - Plant Physiology, 2023 - academic.oup.com
… Although databases gathering genomic sequences, omics data, and protein … cyanobacterial
data in the existing databases, our database greatly expands PPI datasets in cyanobacteria

[HTML][HTML] Emerging Technologies for the Discovery of Novel Diversity in Cyanobacteria and Algae and the Elucidation of Their Valuable Metabolites

G Zammit, MG Zammit, KG Buttigieg - Diversity, 2023 - mdpi.com
PCC 7002, which was found to metabolize compounds such as histidine betaine and g-…
An integrated omics database for Synechococcus sp. PCC 7002, called CyanOmics, has …

A critical review of machine-learning for “multi-omics” marine metabolite datasets

J Manochkumar, AK Cherukuri, RS Kumar… - Computers in Biology …, 2023 - Elsevier
… -scale metabolic model of Synechococcus sp. PCC 7002 “Multi-omics” data from CyanOmics
Prediction and classification of metabolic profiles in cyanobacteria in various growth …

Development of shuttle vectors for rapid prototyping of engineered Synechococcus sp. PCC7002

J Yuan, J Cheng, C Fan, P Wu, Y Zhang, M Cao… - Applied Microbiology …, 2022 - Springer
… expressions in the marine cyanobacterium Synechococcus sp. PCC7002. We identified that
… strain PCC 7002 to nutrient limitations and different nitrogen sources. Front Microbiol 3:145–…

Challenges and prospects for sustainable microalga-based oil: A comprehensive review, with a focus on metabolic and genetic engineering

S Ranjbar, FX Malcata - Fuel, 2022 - Elsevier
… to omics studies and integrated system-biology modeling; however, a “leap of faith” is still
needed, encompassing social acceptance of the huge potential of GMOs to bring about …