Active turnover of DNA methylation during cell fate decisions

A Parry, S Rulands, W Reik - Nature Reviews Genetics, 2021 - nature.com
promoter and a burst of productive transcription. … cyclical binding of transcription factors,
TET enzymes and DNMTs to loci with low to medium CpG content and degenerate transcription

Evidence that direct inhibition of transcription factor binding is the prevailing mode of gene and repeat repression by DNA methylation

S Kaluscha, S Domcke, C Wirbelauer, MB Stadler… - Nature …, 2022 - nature.com
… have a methylated promoter, are transcriptionally inactive in … transcriptionally active and
show low promoter methylation in … This revealed the cyclic AMP response element (CRE) as the …

Reversible promoter methylation determines fluctuating expression of acute phase proteins

SC Zhang, MY Wang, JR Feng, Y Chang, SR Ji, Y Wu - Elife, 2020 - elifesciences.org
Cyclical DNA methylation of a transcriptionally active promoter. Nature 452:45–50. DOI:
https://doi.org/10.1038/nature06544, PMID: 18322525 Mohammad TA, Tsai YS, Ameer S, Chen …

Prokaryotic DNA methylation and its functional roles

HJ Seong, SW Han, WJ Sul - Journal of Microbiology, 2021 - Springer
… MTases are classified as exocyclic (5mC) and endocyclic (6mA, 4mC, also called N-MTases…
the dnaA promoter inhibits dnaA transcription, after which DnaA activates the transcription of …

Cyclic DNA remethylation following active demethylation at euchromatic regions in mouse embryonic stem cells

M Kubiura-Ichimaru, T Ito, L Lefebvre, M Tada - Chromosome Research, 2021 - Springer
DNA methylation changes, especially in euchromatic regions. Our findings suggest that DNA
methylation … with the repressive function of DNA methylation on transcription. In fact, 5mC …

Promoter methylation in a mixed feedback loop circadian clock model

T Silverthorne, ES Oh, AR Stinchcombe - Physical Review E, 2022 - APS
promoters affect transcriptomic activity in the circadian clock. Motivated by experimental
observations that link DNA methylation … al., Cyclical DNA methylation of a transcriptionally active

The role of epigenetic mechanisms in the regulation of gene expression in the cyclical endometrium

AM Retis-Resendiz, IN González-García… - Clinical …, 2021 - Springer
… in regulating transcriptional networks associated with key processes and functions of the
cyclical … We used keywords related to DNA methylation, histone post-translational modifications, …

DNMT1 regulates the timing of DNA methylation by DNMT3 in an enzymatic activity-dependent manner in mouse embryonic stem cells

T Ito, M Kubiura-Ichimaru, Y Murakami, AB Bogutz… - PloS one, 2022 - journals.plos.org
… significance of this active cyclic DNA modification in mouse ESCs … transcriptionally active
and inactive regions in two cell populations of 1KO ESCs, G1 and G2, respectively. The active

DNA methylation epigenetically regulates gene expression in Burkholderia cenocepacia and controls biofilm formation, cell aggregation, and motility

I Vandenbussche, A Sass, M Pinto-Carbó… - Msphere, 2020 - Am Soc Microbiol
… As DNA methylation in bacteria can control binding of TFs outside the promoter region (14), …
correlation between methylation in promoters and transcription (43). To uncover the role of …

Methylation‐dependent transcriptional regulation of crescentin gene (creS) by GcrA in Caulobacter crescentus

SS Mohapatra, A Fioravanti, P Vandame… - Molecular …, 2020 - Wiley Online Library
… a cyclic alternation between a full- to hemi-methylated … that the DNA methylation by CcrM
influences the transcription of … one hemi-methylated state is transcriptionally active, buffering …