Species-specific relationships between DNA and chromatin properties of CpG islands in embryonic stem cells and differentiated cells

J Langerman, D Lopez, M Pellegrini, ST Smale - Stem cell reports, 2021 - cell.com
… co-evolved with compensatory genome adaptation events during mammalian evolution. …
CpG islands, we first evaluated DNA methylation at representative CpG islands and CpG-island

A comparative methylome analysis reveals conservation and divergence of DNA methylation patterns and functions in vertebrates

H Al Adhami, AF Bardet, M Dumas, E Cleroux… - BMC biology, 2022 - Springer
… genes across mammals. Finally, using chemical inhibition of … -rich regions known as CpG
islands (CGIs) that remain mostly … To differentiate allelic from partial random methylation, we …

DNA methylation in mammalian development and disease

ZD Smith, S Hetzel, A Meissner - Nature Reviews Genetics, 2024 - nature.com
CpG islands (CGIs) remain mostly free of methylation throughout these transitions. Many
repetitive elements maintain slightly higher DNA methylation … emerge during differentiation that …

DNA methylation in regulatory T cell differentiation and function: challenges and opportunities

L Bai, X Hao, J Keith, Y Feng - Biomolecules, 2022 - mdpi.com
… primarily at CpG dinucleotides in mammals [30]. The methylation of CpG sites generally …
deficiency is embryonically lethal coupled with hypermethylation of CpG islands [108], acute …

Global DNA methylation pattern involved in the modulation of differentiation potential of adipogenic and myogenic precursors in skeletal muscle of pigs

X Zhang, W Sun, L He, L Wang, K Qiu, J Yin - … Cell Research & Therapy, 2020 - Springer
… , including cell lineage specification and cell differentiation [11, 12]. … b DNA methylation
level across CpG islands in all six … Mammals express at least three classical groups of MAPKs, …

Universal DNA methylation age across mammalian tissues

AT Lu, Z Fei, A Haghani, TR Robeck, JA Zoller, CZ Li… - Nature aging, 2023 - nature.com
methylation profiles, the foundation of pan-tissue epigenetic clocks. … development of universal
pan-mammalian clocks, using 11,754 methylation arrays from our Mammalian Methylation

Universal DNA methylation age across mammalian tissues

AT Lu, Z Fei, A Haghani, TR Robeck, JA Zoller, CZ Li… - BioRxiv, 2021 - biorxiv.org
… have been successfully developed for several different … -mammalian clocks that measure
age in all mammalian species. To address this, we generated data using 11,754 methylation

Comparative whole genome DNA methylation profiling across cattle tissues reveals global and tissue-specific methylation patterns

Y Zhou, S Liu, Y Hu, L Fang, Y Gao, H Xia… - BMC biology, 2020 - Springer
… of cell differentiation, with decreased methylation levels and … high frequency in genomic
regions called CpG islands (CGIs), … constitute roughly half of most mammalian genomes [25]. …

A mammalian methylation array for profiling methylation levels at conserved sequences

A Arneson, A Haghani, MJ Thompson… - Nature …, 2022 - nature.com
CpG island and methylation status We analyzed the CpG island and DNA methylation
properties of CpGs on the mammalian array. An average of 5563 (19%) of probes in the …

Epigenetics and island‐mainland divergence in an insectivorous small mammal

ML Cossette, DT Stewart, A Haghani… - Molecular …, 2023 - Wiley Online Library
CpGs to investigate morphological and DNA methylation patterns … CpG islands (CGI) are
regions of the genome that contain a … Our analysis showed differential methylation patterns and …