Designed folding pathway of modular coiled-coil-based proteins
… Molecular dynamics simulations and stopped-flow Förster … Coiled-coils (CC) are a
frequent suprastructural element, … Since CC-forming peptides are positioned at varying intra-…
frequent suprastructural element, … Since CC-forming peptides are positioned at varying intra-…
De novo protein design, a retrospective
IV Korendovych, WF DeGrado - Quarterly reviews of biophysics, 2020 - cambridge.org
… The design of small molecules and molecular assemblies with … and conformations for even
a modestly long protein … , but was serendipitously found to crystallize as a four helix coiled-coil …
a modestly long protein … , but was serendipitously found to crystallize as a four helix coiled-coil …
From peptides to proteins: coiled-coil tetramers to single-chain 4-helix bundles
… parallel assemblies to antiparallel conformations. For example, … Equilibrium and
variable-temperature CD spectra revealed … to introduce cavities, small-molecule-binding pockets, …
variable-temperature CD spectra revealed … to introduce cavities, small-molecule-binding pockets, …
Coiled-coil protein origami nanostructure modeling for improved characterization and prediction
… , de novo sequences of orthogonally interacting coiled-coil … 4 The limit in the quality of SAXS
fitting while varying the number … These two models are in a similar conformation with a small …
fitting while varying the number … These two models are in a similar conformation with a small …
De novo design of discrete, stable 310-helix peptide assemblies
… conformations occur less commonly in natural proteins. Indeed… Furthermore, by analogy with
their use in designed coiled-coil … in sequence leading to varying degrees of oligomerization. …
their use in designed coiled-coil … in sequence leading to varying degrees of oligomerization. …
Programmable de novo designed coiled coil-mediated phase separation in mammalian cells
… of the interaction strength by varying their sequence and lengths … We leveraged the molecular
level detail provided in the … Aiming to design single-component condensates, we used two …
level detail provided in the … Aiming to design single-component condensates, we used two …
Rational Design of Phosphorylation-Responsive Coiled Coil-Peptide Assemblies
HF Thompson, JL Beesley, HD Langlands… - ACS Synthetic …, 2023 - ACS Publications
… (A) Representative CD spectra at 5 C and (B) variable … (1) Examples of this include
conformational changes in … switchable PPIs permit high-speed molecular signaling that does not …
conformational changes in … switchable PPIs permit high-speed molecular signaling that does not …
Recent progress using de novo design to study protein structure, design and binding interactions
J Ferrando, LA Solomon - Life, 2021 - mdpi.com
… systems, imparting a novel way to change the conformation … As an example of how variable
libraries can be used to … Their work took a helix that can spontaneously form into a coiled coil …
libraries can be used to … Their work took a helix that can spontaneously form into a coiled coil …
[PDF][PDF] Design, characterisation and applications of de novo proteins
KL Shelley - 2022 - research-information.bris.ac.uk
… have succeeded without his molecular biology Midas touch! I … the design of a wide range of
de novo coiled-coil structures. (… of larger proteins, for which conformational updates involve a …
de novo coiled-coil structures. (… of larger proteins, for which conformational updates involve a …
Rational design and self-assembly of coiled-coil linked SasG protein fibrils
… molecular self-assembly. Here we characterize a new two subunit system composed of the
SasG rod protein genetically conjugated with de novo designed … of varying lengths featuring …
SasG rod protein genetically conjugated with de novo designed … of varying lengths featuring …