… We also find that transcription from bidirectional promoters … by defining the position at which
continuous RNA-seq coverage … maximise the signal for defining this region. Like DAFT-seq, …

… annotation of genes, transcription signals in the form of promoter regions or terminators,
codon … in a genome before determining which subset of directons are co-transcribed, ie, are …

… gene expression and transcription activation at genome-… ) 55 , and 10 random genes from
the mid-area. Additionally, we … and false negative estimates were defined based on these qRT-…

… , use cellular RNAs as substrates, reverse transcribing and … of regions that are identical to
other genes but also regions … small RNA-seq where reads accumulate in very well defined …

… at transcription start sites (TSSs), transcription termination … non-spliced data and accurately
define TSSs and TTSs and the … regions, in which the length of the amplified region ranged …

… , we also enable users to study transcription in any genomic region, annotated or not. …
Megadepth also summarizes the amount of sequencing coverage within genomic intervals defined …

… Next, we applied a minimum TPM threshold of 1 to define a gene as expressed and found
that … We detected 6582 AS events, mostly transcription start sites and transcription termination …

… even stronger for highly transcribed introns (Supplementary Fig… region variants (“Methods”
section), which were defined as … site dinucleotide and splice region variants, as defined by the …

… Another limitation of rMATS is that it focuses on determining … across the whole intron
region, a feature unique to iREAD. … because it could result from the transcription of exons. This …

… of truncated proteins translated from IRIs seem to be available in the existing literature. … It
is worth mentioning that rMATS adopts a flexible likelihood-ratio test, allowing users to define …