MesKit: a tool kit for dissecting cancer evolution of multi-region tumor biopsies through somatic alterations
M Liu, J Chen, X Wang, C Wang, X Zhang, Y Xie… - …, 2021 - academic.oup.com
… Cancer evolves through a process of somatic alterations [1], … changes can be detected by
multi-region sequencing (MRS). … Because multiple samples collected from a single tumor …
multi-region sequencing (MRS). … Because multiple samples collected from a single tumor …
Multi-region sequencing depicts intratumor heterogeneity and clonal evolution in cervical cancer
C Wang, R Bai, Y Liu, K Wang, Y Wang, J Yang, H Cai… - Medical Oncology, 2023 - Springer
… patients rarely share recurrent mutations, … quick detection mode to determine the HPV types
and HPV-related reads to confirm whether the co-infection of multiple HPV existed in a tumor …
and HPV-related reads to confirm whether the co-infection of multiple HPV existed in a tumor …
Multi‐regional sequencing reveals the genetic and immune heterogeneity of non‐cancerous tissues in gastric cancer
Y Zhou, S Li, Y Hu, X Xu, J Cui, S Li, Z Li… - The Journal of …, 2024 - Wiley Online Library
… SNVs) and 705 indels were detected in 41 NATs, which amounts … were detected in tumor
samples (Figure 1C), suggesting that … frequent driver events occurring at a different evolutionary …
samples (Figure 1C), suggesting that … frequent driver events occurring at a different evolutionary …
Revealing the subtyping of non‐small cell lung cancer based on genomic evolutionary patterns by multi‐region sequencing
G Liao, X Liang, Y Ping, Y Zhang, J Liao… - Cancer …, 2020 - Wiley Online Library
… can help us to characterize the ITH of tumor tissue and … based on the evolutionary patterns
can help to detect the phenotype… evolution across multiple cancer types and revealed different …
can help to detect the phenotype… evolution across multiple cancer types and revealed different …
Multi-region exome sequencing reveals the intratumoral heterogeneity of surgically resected small cell lung cancer
… The median multi-region based tumor mutation burden (TMB) … on somatic mutations detected
in multiple regions. Figure 3a … The raw sequencing data generated in this study have been …
in multiple regions. Figure 3a … The raw sequencing data generated in this study have been …
Multi-region sequencing with spatial information enables accurate heterogeneity estimation and risk stratification in liver cancer
C Yang, S Zhang, Z Cheng, Z Liu, L Zhang, K Jiang… - Genome Medicine, 2022 - Springer
… -ITH tumors) with significant differences in multiple biological … Raw sequencing data of
E-MTAB-5905 was downloaded … , and thus may facilitate the development of acquired resistance [6…
E-MTAB-5905 was downloaded … , and thus may facilitate the development of acquired resistance [6…
Statistical Mechanical theory for spatio-temporal evolution of Intra-tumor heterogeneity in cancers: Analysis of Multiregion sequencing data
… sequencing, obtained by sampling multiple regions of a single tumor (multi-region sequencing…
), where the non-synonymous mutations detected across all the regions are displayed in …
), where the non-synonymous mutations detected across all the regions are displayed in …
[PDF][PDF] Intra-prostatic tumour evolution, steps in metastatic spread and histogenomic associations revealed by integration of multi-region whole genome sequencing …
AO Lovell, F Lopez, T Leslie, F Buffa… - … - storage.prod.researchhub.com
… We performed whole genome sequencing on 42 prostate cancer … We systematically collected
multiple samples as punches … of this clone and no copy number changes were detected. …
multiple samples as punches … of this clone and no copy number changes were detected. …
Intra-prostatic tumour evolution, steps in metastatic spread and histogenomic associations revealed by integration of multi-region whole-genome sequencing with …
S Rao, C Verrill, L Cerundolo, NK Alham, Z Kaya… - Genome Medicine, 2024 - Springer
… a cancer evolution perspective. Hence, we aimed to perform … We systematically collected
multiple samples as punches … of this clone and no copy number changes were detected. …
multiple samples as punches … of this clone and no copy number changes were detected. …
Quantifying the influence of mutation detection on tumour subclonal reconstruction
LY Liu, V Bhandari, A Salcedo, SMG Espiritu… - Nature …, 2020 - nature.com
… of 10 tumours with multi-region sampling. We show that … Raw sequencing data from the
tumour and normal samples … cancers where samples from multiple regions of the tumour …
tumour and normal samples … cancers where samples from multiple regions of the tumour …