Retroactive data structure for protein–protein interaction in lung cancer using Dijkstra algorithm

…, E Rajasekar, S Ippatapu Venkata, S Chereddy - International Journal of …, 2024 - Springer
… In the case of cancer, it is genes that play a vital role in the early detection of … by these
genes are extracted from STRINGDB through an API call in the form of a PPI network. These …

Identification of Essential Cancer Protein in PPI Network Using Graph-Based Approach

T Rout, NRR Choudhury, SK Panda… - 2023 IEEE 11th …, 2023 - ieeexplore.ieee.org
… Li et al. proposed a graph-based method for identifying lung cancer-related genes in … a
Dijkstra-based shortest path algorithm in a PPI network to retrieve cancer genes for four cancer

A systematic review of graph-based explorations of PPI networks: methods, resources, and best practices

T Rout, A Mohapatra, M Kar - Network Modeling Analysis in Health …, 2024 - Springer
cancer, cancer diseases, breast cancer, lung cancer, and … the PPI network and its relevance
to cancer-related processes. … the cancer PPI network, identifying cancer-associated modules…

Exploring lung cancer protein network: Understanding structure and function through metric space modeling

E Fadhal - European Journal of Pure and Applied Mathematics, 2024 - ejpam.com
… on the PPI network in lung cancer, aiming to identify key … modeled the lung cancer
protein-protein interaction network (… .org/) and executing the Dijkstra algorithm. This algorithm was …

Graph theoretical way of understanding protein-protein interaction in ovarian cancer

V Yegnanarayanan… - Journal of Intelligent …, 2022 - content.iospress.com
… enabled the identification of tumor suppressor genes and … Dijkstras greedy algorithm is a
popular algorithm for finding … that are differential among cancer and normal PPI could be a …

Epigenome‐wide tobacco‐related methylation signature identification and their multilevel regulatory network inference for lung adenocarcinoma

YM Dong, M Li, QE He, YF Tong… - BioMed Research …, 2020 - Wiley Online Library
… The Dijkstra algorithm served to find the shortest path in the graph G … of the gene is greater
than or equal to 100, we found that the genes obtained by the BIMC gene and the PPI network

Novel comprehensive bioinformatics approaches to determine the molecular genetic susceptibility profile of moderate and severe asthma

H Zayed - International Journal of Molecular Sciences, 2020 - mdpi.com
… -to-severe asthma-related DEGs using the PPI network. It also … The PPI network analysis,
among other genes, identified … the lungs are involved in the effects of cystic fibrosis, lung cancer

Exploring the significance of zone 1 in human protein interaction networks: Identifying potential therapeutic targets for cancer treatment.

HR Alqattan, E Fadhal - Onkologia i Radioterapia, 2023 - search.ebscohost.com
identify hub proteins in breast cancer PPIs, as well as key nodes associated with lung cancer
… /www.boost.org/) and implemented the Dijkstra algorithm. The purpose was to calculate the …

Computational identification of Guillain-Barre syndrome-related genes by an mRNA gene expression profile and a protein–protein interaction network

C Wang, S Liao, Y Wang, X Hu, J Xu - Frontiers in Molecular …, 2022 - frontiersin.org
… In this study, the Dijkstra algorithm was implemented with R package “igraph.” A … using
the PPI network, we developed a computational method to search GBS-related genes based

[PDF][PDF] Design of new algorithms for gene network reconstruction applied to in silico modeling of biomedical data

FMD Chaves - rio.upo.es
… We applied our method to the analysis of a lung cancer … a PPI network we may weigh the
edges of the graph using affinity … their Dijkstra distance from such first nodes makes it simple to …