[HTML][HTML] An overview of duplicated gene detection methods: Why the duplication mechanism has to be accounted for in their choice
T Lallemand, M Leduc, C Landès, C Rizzon, E Lerat - Genes, 2020 - mdpi.com
… is characterized by a heavy loss of duplicated genes following … duplication can arise via
the homologous recombination … because pairs of homologous genes between these pairs of …
the homologous recombination … because pairs of homologous genes between these pairs of …
Homoeologous gene expression and co-expression network analyses and evolutionary inference in allopolyploids
… of duplicate gene expression, including an overestimation of … subgenome) homoeologs in
the polyploid AD 1 transcriptomes, … In the following analysis, we binned homoeologous gene …
the polyploid AD 1 transcriptomes, … In the following analysis, we binned homoeologous gene …
[HTML][HTML] The impact of tandem duplication on gene evolution in Solanaceae species
YL Huang, LK Zhang, K Zhang, SM Chen, JB Hu… - Journal of Integrative …, 2022 - Elsevier
… The analysis was used to investigate the phenomenon of … The retention of duplicated genes
does not occur randomly. … gene pair was homologous, it was classified into the gene cluster …
does not occur randomly. … gene pair was homologous, it was classified into the gene cluster …
Homoeologous exchanges occur through intragenic recombination generating novel transcripts and proteins in wheat and other polyploids
Z Zhang, X Gou, H Xun, Y Bian, X Ma… - Proceedings of the …, 2020 - National Acad Sciences
… duplication—is a major driving force in genome evolution and … This analysis has enabled
us to better understand the HE … of HR hotspots were found for homoeologous recombination. …
us to better understand the HE … of HR hotspots were found for homoeologous recombination. …
[HTML][HTML] Parallel evolution of amphioxus and vertebrate small-scale gene duplications
… here an analysis of the gene duplication evolution of the … the analysis of functional
categories, where duplicated genes … We converted the Mikado transcriptome assembly and the …
categories, where duplicated genes … We converted the Mikado transcriptome assembly and the …
[HTML][HTML] Evolution of homeologous gene expression in polyploid wheat
… The transcriptome data are from a previously published study … mapping and expression
analysis, we kept only genes where 85% … of duplicated genes during polyploid wheat evolution. …
analysis, we kept only genes where 85% … of duplicated genes during polyploid wheat evolution. …
[HTML][HTML] Rapid Genome Evolution and Adaptation of Thlaspi arvense Mediated by Recurrent RNA-Based and Tandem Gene Duplications
Y Hu, X Wu, G Jin, J Peng, R Leng, L Li, D Gui… - Frontiers in Plant …, 2022 - frontiersin.org
… of analysis method for the tandem duplicated genes in SEOs … gene families, we used previously
described transcriptomes of T… the subsequent tandem duplication of homologous genes. …
described transcriptomes of T… the subsequent tandem duplication of homologous genes. …
[HTML][HTML] Illegitimate Recombination between Duplicated Genes Generated from Recursive Polyploidizations Accelerated the Divergence of the Genus Arachis
S Shen, Y Li, J Wang, C Wei, Z Wang, W Ge, M Yuan… - Genes, 2021 - mdpi.com
… , we defined homologous gene quartets according to the gene … colinearity analysis, we
inferred the gene colinearity within … accelerates the evolutionary rate of duplicate genes and …
inferred the gene colinearity within … accelerates the evolutionary rate of duplicate genes and …
[HTML][HTML] Comparative Analysis Reveals Different Evolutionary Fates and Biological Functions in Wheat Duplicated Genes (Triticum aestivum L.)
L Cui, H Cheng, Z Yang, C Xia, L Zhang, X Kong - Plants, 2023 - mdpi.com
… might be explained by the meiotic homologous recombination in cereals being biased towards
… Although dispersed duplication-derived genes and non-duplicated genes tended to be …
… Although dispersed duplication-derived genes and non-duplicated genes tended to be …
Homoeolog gene expression analysis reveals novel expression biases in upland hybrid cotton under intraspecific hybridization
K Shahzad, X Zhang, M Zhang, L Guo, T Qi… - Functional & Integrative …, 2022 - Springer
… displays preferential expression to the transcriptome as compared to the other. The … , an
unbalanced homoeolog expression change states a situation where more duplicate gene pairs …
unbalanced homoeolog expression change states a situation where more duplicate gene pairs …