The role of gene duplication in the divergence of the sweet cherry

M Abdullah, IA Sabir, IH Shah, M Sajid, X Liu, S Jiu… - Plant Gene, 2022 - Elsevier
… and transcriptome datasets. The proximal and tandem mode of … all) was used to determine
all possible homologous geneanalysis to characterize the functionality of duplicated genes. …

[HTML][HTML] Functional roles of homologous recombination and non-homologous end joining in DNA damage response and microevolution in Cryptococcus neoformans

KW Jung, JH Jung, HY Park - Journal of Fungi, 2021 - mdpi.com
… Cells have evolved to contain sophisticated DNA repair systems to … Our previous
transcriptome analysis of the radiation-… Three independent biological experiments with duplicate

[HTML][HTML] Complex analysis of retroposed genes' contribution to human genome, proteome and transcriptome

MR Kubiak, MW Szcześniak, I Makałowska - Genes, 2020 - mdpi.com
Gene duplication is a major driver of organismal evolution. … and novel genes resulting from
RNA-mediated duplication [13]; to the … Such non-allelic homologous recombination between a …

Non-homologous chromosome pairing during meiosis in haploid Brassica rapa

J Yuan, G Shi, Y Yang, J Braynen, X Shi, X Wei, Z Hao… - Plant Cell Reports, 2021 - Springer
… genome duplication might reshape non-homologous pairing … rapa, and transcriptome
analysis was used to reveal the … family gene (Bra017457) related to homologous recombination

[PDF][PDF] Global insights into homoeolog gene expression in upland cotton under intraspecific hybridization

K Shahzad, X Zhang, M Zhang, L Guo, T Qi, H Tang… - 2021 - pdfs.semanticscholar.org
… to a situation where more duplicate gene pairs demonstrate … For instance, high-throughput
transcriptome sequencing is a … Functional analysis of these novel homoeolog gene pairs …

Dosage-sensitivity shapes how genes transcriptionally respond to allopolyploidy and homoeologous exchange in resynthesized Brassica napus

KA Bird, JC Pires, R VanBuren, Z Xiong, PP Edger - Genetics, 2023 - academic.oup.com
homoeologous exchanges that recombine, duplicate, and … is inferred based on patterns of
duplicate gene retention. … limited our analysis to the syntenic homoeologous genes identified …

[HTML][HTML] Transcriptome and Comparative Chloroplast Genome Analysis of Vincetoxicum versicolor: Insights Into Molecular Evolution and Phylogenetic Implication

X Yu, W Wang, H Yang, X Zhang, D Wang… - Frontiers in …, 2021 - frontiersin.org
… , aligned separately, and recombined to construct a matrix using … vocabulary to annotate
homologous genes and protein … Among these genes, 19 were duplicated in the IR regions, …

[HTML][HTML] Genomic and Transcriptional Profiles of Kelch-like (klhl) Gene Family in Polyploid Carassius Complex

F Peng, L Zhou, W Lu, R Gan, M Lu, Z Li… - International Journal of …, 2023 - mdpi.com
… (klhl) genes to study the evolution of the duplicated genes in … Transcriptome results were
verified as the consistent gene … klhl genes were selected for allele specific expression analysis. …

[HTML][HTML] Alterations in homologous recombination repair genes in prostate cancer brain metastases

A Rodriguez-Calero, J Gallon, D Akhoundova… - Nature …, 2022 - nature.com
… We highlight the clonal evolution occurring in PCBM and … IHC analysis for protein expression
of frequently altered genes in PCa … . Local realignment, duplicate removal, and base quality …

Global insights into duplicated gene expression and alternative splicing in polyploid Brassica napus under heat, cold, and drought stress

JS Lee, KL Adams - The Plant Genome, 2020 - Wiley Online Library
… Polyploidy has been a prevalent process during plant evolution … Because recombination can
occur within genes, AS was … comprehensive transcriptome analysis of homoeologous gene