The multiple fates of gene duplications: deletion, hypofunctionalization, subfunctionalization, neofunctionalization, dosage balance constraints, and neutral variation
JA Birchler, H Yang - The Plant Cell, 2022 - academic.oup.com
… Gene duplications can occur in tandem via recombination … If we consider the notion that
duplicate genes are maintained … circumstance is that homoeologous copies of genes in an …
duplicate genes are maintained … circumstance is that homoeologous copies of genes in an …
Dynamic evolution of recently duplicated genes in Caenorhabditis elegans
F Ma, CY Lau, C Zheng - bioRxiv, 2022 - biorxiv.org
… In fact, using the WormExp gene set enrichment analysis (32), we found that the … (eg,
non-allelic homologous recombination) that drove gene duplication may also lead to the generation …
non-allelic homologous recombination) that drove gene duplication may also lead to the generation …
[HTML][HTML] Comprehensive Transcriptome Analysis Reveals Insights into Phylogeny and Positively Selected Genes of Sillago Species
F Lou, Y Zhang, N Song, D Ji, T Gao - Animals, 2020 - mdpi.com
… duplicate genes, which further affected the accuracy of distinguishing orthologous genes
from duplicated … comparing the gene evolutionary rates based on orthologous gene datasets, …
from duplicated … comparing the gene evolutionary rates based on orthologous gene datasets, …
[HTML][HTML] Genome-wide characterization of WRKY transcription factors revealed gene duplication and diversification in populations of wild to domesticated barley
J Kan, G Gao, Q He, Q Gao, C Jiang, S Ahmar… - International Journal of …, 2021 - mdpi.com
… a WRKY domain and a homologous sequence found from ‘… cultivated barley were duplicated
genes. Several HvWRKYs (… pairs of putative genes detected from the transcriptome were …
genes. Several HvWRKYs (… pairs of putative genes detected from the transcriptome were …
Duplicate gene expression and possible mechanisms of paralog retention during bacterial genome expansion
AI Garber, EB Sano, AL Gallagher… - … Biology and Evolution, 2024 - academic.oup.com
… Acaryochloris genomes and transcriptomes therefore provide the … The present analysis
revealed cases of both increased … protein involved in homologous recombination, DNA damage …
revealed cases of both increased … protein involved in homologous recombination, DNA damage …
[HTML][HTML] … of ohnologs encoding conserved antiviral responses in tetraploid common carp suggest absence of subgenome dominance after whole genome duplication
A Blasweiler, HJ Megens, MRG Goldman… - Genomics, 2023 - Elsevier
… Transcriptome analysis confirmed induction of 88 ISG ohnologs … analysis also showed the
high degree of duplicated genes … of recombination between homologous chromosomes of the …
high degree of duplicated genes … of recombination between homologous chromosomes of the …
[HTML][HTML] Symmetric subgenomes and balanced homoeolog expression stabilize the establishment of allopolyploidy in cyprinid fish
L Ren, X Gao, J Cui, C Zhang, H Dai, M Luo, S He… - BMC biology, 2022 - Springer
… - or neo-functionalization of duplicated genes and increased … confusion about which genetic
characteristics are necessary in … The full-length transcriptome was obtained using PacBio …
characteristics are necessary in … The full-length transcriptome was obtained using PacBio …
[HTML][HTML] Homoeolog expression bias and expression level dominance (ELD) in four tissues of natural allotetraploid Brassica napus
M Li, R Wang, X Wu, J Wang - BMC genomics, 2020 - Springer
… In this study, we analyzed the transcriptome of four major tissues (stems, leaves, … duplicate
genes (homoeologs) in naturally occurring allotetraploid B. napus and helped to characterize …
genes (homoeologs) in naturally occurring allotetraploid B. napus and helped to characterize …
[HTML][HTML] Homoeologous exchanges, segmental allopolyploidy, and polyploid genome evolution
… Today, however, we would most likely characterize these cases as autopolyploids. As …
pollination, as gametes with a homoeologous recombination event (duplication/deletion) will unite …
pollination, as gametes with a homoeologous recombination event (duplication/deletion) will unite …
[HTML][HTML] Homoeologous evolution of the allotetraploid genome of Poa annua L.
CW Benson, MR Sheltra, PJ Maughan, EN Jellen… - BMC genomics, 2023 - Springer
… , homoeologs can recombine and homoeologous exchanges (… tandemly duplicated and
1,815 proximally duplicated genes … In addition to homoeolog expression analysis, we also used …
1,815 proximally duplicated genes … In addition to homoeolog expression analysis, we also used …