Ensembl 2022
… history of Ensembl via our dedicated Ensembl Rapid Release platform ( http://rapid.ensembl.…
We have a range of specific software tools for specific tasks, such as the Ensembl Variant …
We have a range of specific software tools for specific tasks, such as the Ensembl Variant …
Ensembl Genomes 2022: an expanding genome resource for non-vertebrates
AD Yates, J Allen, RM Amode, AG Azov… - Nucleic acids …, 2022 - academic.oup.com
… in Ensembl Genomes. Our efforts to merge Ensembl and Ensembl Genomes resources
continues within the context of Ensembl's new infrastructure and website project (https://2020.…
continues within the context of Ensembl's new infrastructure and website project (https://2020.…
Ensembl 2023
FJ Martin, MR Amode, A Aneja… - Nucleic acids …, 2023 - academic.oup.com
… and applications that utilise the Ensembl platform. In recent … , it is our goal at Ensembl to
create high-quality annotations, … graphs), updates to the Ensembl Variant Effect Predictor (VEP…
create high-quality annotations, … graphs), updates to the Ensembl Variant Effect Predictor (VEP…
Ensembl 2021
… , specialist tools such as the Ensembl Variant Effect Predictor, download files … Ensembl
developments including two new website portals. Ensembl Rapid Release (http://rapid.ensembl.…
developments including two new website portals. Ensembl Rapid Release (http://rapid.ensembl.…
Ensembl 2024
PW Harrison, MR Amode… - Nucleic acids …, 2024 - academic.oup.com
… support food security research with the first Ensembl regulatory builds, beyond human
and … our suite of Ensembl tools, most notably with improvements to the Ensembl Variant Effect …
and … our suite of Ensembl tools, most notably with improvements to the Ensembl Variant Effect …
Generation of ENSEMBL-based proteogenomics databases boosts the identification of non-canonical peptides
We have implemented the pypgatk package and the pgdb workflow to create proteogenomics
databases based on ENSEMBL resources. The tools allow the generation of protein …
databases based on ENSEMBL resources. The tools allow the generation of protein …
The european bioinformatics institute (EMBL-EBI) in 2021
G Cantelli, A Bateman, C Brooksbank… - Nucleic Acids …, 2022 - academic.oup.com
… Through GIFTS, biocurators at EMBL-EBI have the tools to annotate and exchange transcript
and protein sequence information to map content between Ensembl and UniProt, improving …
and protein sequence information to map content between Ensembl and UniProt, improving …
Search and sequence analysis tools services from EMBL-EBI in 2022
F Madeira, M Pearce, ARN Tivey… - Nucleic acids …, 2022 - academic.oup.com
… use of sequence similarity search tools comprises 45 000+ distinct sequence libraries from
major database resources hosted at EMBL-EBI, including UniProtKB (14), ENA and Ensembl …
major database resources hosted at EMBL-EBI, including UniProtKB (14), ENA and Ensembl …
The Ensembl COVID-19 resource: ongoing integration of public SARS-CoV-2 data
NH De Silva, J Bhai, M Chakiachvili… - Nucleic Acids …, 2022 - academic.oup.com
… such as the Ensembl Variant Effect Predictor have been integrated. The Ensembl COVID-19 …
In this manuscript, we detail its features and development that uses rapid Ensembl update …
In this manuscript, we detail its features and development that uses rapid Ensembl update …
Annotating and prioritizing genomic variants using the Ensembl Variant Effect Predictor—A tutorial
SE Hunt, B Moore, RM Amode, IM Armean… - Human …, 2022 - Wiley Online Library
… Ensembl VEP analysis can be performed using a highly … variant annotation using the
Ensembl VEP web tool, which … Here we present a tutorial describing the Ensembl VEP web …
Ensembl VEP web tool, which … Here we present a tutorial describing the Ensembl VEP web …