… This, along with different taxon sampling strategies, may be important reasons why we
detect a potent effect of systematic bias on phylogenomic inference using our newly compiled …

… in the context of genome-scale inference of phylogenies. Comparative … These figures aptly
reflect the biased distribution of … framework significantly improves the detection of gene-gene …

… phylogeny. To examine poorly resolved relationships and assess progress toward a
genome-scale phylogeny of … To conduct sensitivity analyses for potential systematic errors or …

… In this study, we provide a genome-scale perspective on the phylogenetic utility of PIBS …
topology and the TimeTree topology and detected annotation biases in PIBS split support using …

… For easy determination of the relationships among any subset of taxa, the … To check
whether our sample of taxa were biased toward particular ecological lifestyles, we obtained the …

… introduced by reference genome choices in phylogenetics is warranted. Systematic biases
in sites … While we did not detect differences in mutation spec‑ tra retained in outgroup versus …

… bias the inferred phylogeny. In this perspective, are discussed what I consider as the 10 most
relevant points when planning a genome-scale phylogenetic … by improving the detection of …

… fungal phylogeny. To begin filling these gaps and assess progress toward a genome-scale
phylogeny … To conduct sensitivity analyses for potential systematic errors or biases that may …

… as important indicators of phylogenetic progress for many … and concern about statistical
bias arising from overly simplistic … that come along with genome-scale data, employing careful …

… transcriptome assemblies and to systematically construct two separate phylogenomic …
then perform identical phylogenetic analyses on each dataset, allowing the identification of …