DNA barcoding for wood identification: Global review of the last decade and future perspective

L Jiao, Y Lu, T He, J Guo, Y Yin - IAWA Journal, 2020 - brill.com
… of DNA extraction methods for processed or ancient wood, … a short DNA sequence from a
standard part of the genome to … of wood tissues is a key step to obtain a high yield of wood DNA

Hybridization capture of larch (Larix Mill.) chloroplast genomes from sedimentary ancient DNA reveals past changes of Siberian forest

L Schulte, N Bernhardt… - Molecular Ecology …, 2021 - Wiley Online Library
… To evaluate the retrieval of Larix chloroplast genome sequences, alignments against a
reference were made with three data sets: the complete capture data set and the Larix-classified …

Ancient DNA analysis

L Orlando, R Allaby, P Skoglund… - Nature reviews …, 2021 - nature.com
… from thousands of ancient archaeological specimens, and the number of ancient biological
tissues amenable to genome sequencing is growing steadily. Ancient DNA fragments are …

Microbial diversity and composition of the Preah Vihear temple in Cambodia by high-throughput sequencing based on genomic DNA and RNA

H Meng, X Zhang, Y Katayama, Q Ge, JD Gu - International Biodeterioration …, 2020 - Elsevier
… The Prasat Preah Vihear temple is a unique and typical ancient temple for Hindu religion, …
is significantly higher by DNA sequencing result than that by RNA gene sequencing result in …

[HTML][HTML] PyDamage: automated ancient damage identification and estimation for contigs in ancient DNA de novo assembly

M Borry, A Hübner, AB Rohrlach, C Warinner - PeerJ, 2021 - peerj.com
… (contigs), including genes and even genomes, from short DNA sequencing reads.
Applying this technique to metagenomic data derived from archaeological remains, such as …

[HTML][HTML] The challenges of reconstructing tropical biodiversity with sedimentary ancient DNA: A 2200-year-long metagenomic record from Bwindi impenetrable forest …

R Dommain, M Andama, MM McDonough… - Frontiers in Ecology …, 2020 - frontiersin.org
… non-aquatic plants and wood for AMS radiocarbon … DNA sequences deriving from deeper,
earlier sediments suggest that at least a portion of these molecules are preserved ancient DNA

[HTML][HTML] Ancient DNA from museum specimens and next generation sequencing help resolve the controversial evolutionary history of the critically endangered Puebla …

S Castañeda-Rico, L León-Paniagua… - Frontiers in Ecology …, 2020 - frontiersin.org
… morphological data and the molecular data based on Sanger sequencing, we aimed to test
whether we … increased owing to its higher throughput, reduced cost, and benefits of obtaining …

[HTML][HTML] Ancient DNA methods improve forensic DNA profiling of Korean War and World War II unknowns

EI Zavala, JT Thomas, K Sturk-Andreaggi… - Genes, 2022 - mdpi.com
… success rate with PCR and Sanger sequencing), the sample … which is high in copy number
relative to nuclear DNA. Additional … DNA profiles from historical remains, the ancient DNA field …

[HTML][HTML] High resolution ancient sedimentary DNA shows that alpine plant diversity is associated with human land use and climate change

S Garcés-Pastor, E Coissac, S Lavergne… - Nature …, 2022 - nature.com
… Recent advances in sedimentary ancient DNA (sedaDNA) have greatly improved our …
sequences of off-target, non-mammalian, human, or pig/boar origin, we retained 14 sequences

Microstratigraphic preservation of ancient faunal and hominin DNA in Pleistocene cave sediments

D Massilani, MW Morley, SM Mentzer… - Proceedings of the …, 2022 - National Acad Sciences
… This information may be crucial for associating DNA sequences with specific parts of a …
three times with tissue papers soaked in high performance liquid chromatography (HPLC)-grade …