On the role of transposable elements in the regulation of gene expression and subgenomic interactions in crop genomes

RA Gill, F Scossa, GJ King, AA Golicz… - … Reviews in Plant …, 2021 - Taylor & Francis
Transposable elements (TEs) represent a major and variable portion of plant genomes, and
… TE-derived siRNAs in the context of polyploid plant evolution and environmental stress, and …

All families of transposable elements were active in the recent wheat genome evolution and polyploidy had no impact on their activity

N Papon, P Lasserre‐Zuber, H Rimbert… - … Plant Genome, 2023 - Wiley Online Library
Transposable elements (TEs) are key factors of genome evolution and their contribution to
plant … They are particularly prominent in the genomes of Triticeae, a tribe of monocot plants

The plastic genome: The impact of transposable elements on gene functionality and genomic structural variations

M Fambrini, G Usai, A Vangelisti, F Mascagni… - Genesis, 2020 - Wiley Online Library
… of genomic stress such as biotic or abiotic stresses, polyploidy and interspecific hybridizations
typical in plantsPlant genes tend to have low levels of methylation at CHG and CHH sites …

Transposable Elements and Polyploidy in Plants

P Tyagi, A Singh, P Saraswat… - Plant Transposable …, 2023 - taylorfrancis.com
Plant genomes and TEs evolve simultaneously and their coexistence has led to controlled …
by polyploid systems to check TE activities and also affect the process of evolution by genome

Evolutionary dynamics of transposable elements and satellite DNAs in polyploid Spartina species

D Giraud, O Lima, V Huteau, O Coriton, J Boutte… - Plant Science, 2021 - Elsevier
… Repeated sequences and polyploidy play a central role in plant genome dynamics. Here,
we analyze the evolutionary dynamics of repeats in tetraploid and hexaploid Spartina species …

Pangenome analyses reveal impact of transposable elements and ploidy on the evolution of potato species

I Bozan, SR Achakkagari, NL Anglin… - Proceedings of the …, 2023 - National Acad Sciences
… diploid and polyploid species across section Petota by looking at present and absent genes
at a … analyses of complex plant genomes in search of climate smart adaptations”) to MVS …

The impact of transposable elements on the structure, evolution and function of the rice genome

R Akakpo, MC Carpentier, Y Ie Hsing… - New …, 2020 - Wiley Online Library
… 2 Gbp suggest that the majority of plant genomes are composed mostly of TEs or TE-related …
of TEs in plant genomes raises the overarching question of their biological impact and how …

Gene and Transposable Element Expression Evolution Following Recent and Past Polyploidy Events in Spartina (Poaceae)

D Giraud, O Lima, M Rousseau-Gueutin… - Frontiers in …, 2021 - frontiersin.org
… of plant genomes (Bennetzen and Wang, 2014). Transposable elements (TEs) affect in
various ways the structure and expression of polyploid genomes. Several studies (reviewed in …

Specificities and dynamics of transposable elements in land plants

C Mhiri, F Borges, MA Grandbastien - Biology, 2022 - mdpi.com
… of transposon lineages in complex plant genomes, … and diversification of mobile genetic
elements in land plants. … return a polyploid genome to a diploid-like genome, such as …

Transposable elements in plants: Recent advancements, tools and prospects

M Ramakrishnan, L Satish, A Sharma… - Plant Molecular Biology …, 2022 - Springer
… We discuss current strategies in using TEs for the genetic dissection of plant genomes.
This review covers opportunities to use different TEs databases to increase the productivity of …