A survey on computational models for predicting protein–protein interactions
… We explain how the performance of PPI prediction can be improved if these issues are … The
robustness of RWS could be decreased by the simple cut-off-based strategy used to maintain …
robustness of RWS could be decreased by the simple cut-off-based strategy used to maintain …
Assessment of community efforts to advance network-based prediction of protein–protein interactions
… To better demonstrate the performance variability of the different methods, we ranked those
… to guide protein–protein interaction assays, by prioritizing interactions with a high predicted …
… to guide protein–protein interaction assays, by prioritizing interactions with a high predicted …
Recent advances in predicting protein–protein interactions with the aid of artificial intelligence algorithms
… supplement and guide wet-laboratory's experimental work [3]… of reported PPIs has increased
substantially. Especially, the … binding interface prediction method developed by modifying …
substantially. Especially, the … binding interface prediction method developed by modifying …
Evolution of sequence-based bioinformatics tools for protein-protein interaction prediction
… are integrated by using various statistical strategies such as logistic … used in bioinformatics
research to enhance the prediction … improvement of plant-pathogen protein-protein interaction …
research to enhance the prediction … improvement of plant-pathogen protein-protein interaction …
Learning spatial structures of proteins improves protein–protein interaction prediction
… protein structures improves the performance of protein–protein interaction (PPI) prediction. …
In the future, we will try to apply the new strategy of protein representation learning method …
In the future, we will try to apply the new strategy of protein representation learning method …
Better link prediction for protein-protein interaction networks
HY Yuen, J Jansson - 2020 IEEE 20th International Conference …, 2020 - ieeexplore.ieee.org
… In more advanced use cases, analysis in targeting disruptive PPIs can even introduce new
cancer therapeutic strategies [7]. The basis of meaningful and comprehensive discoveries is …
cancer therapeutic strategies [7]. The basis of meaningful and comprehensive discoveries is …
Predicting Protein–Protein Interactions Based on Ensemble Learning-Based Model from Protein Sequence
… better accuracy results than KNN and SVM; it also demonstrates when predicting the
protein–protein interactions, RF … we proposed has better prediction performance for predicting …
protein–protein interactions, RF … we proposed has better prediction performance for predicting …
A novel ensemble learning-based computational method to predict protein-protein interactions from protein primary sequences
… as a powerful tool to guide researchers to study the functions … ; through this, we are hoping
to better solve the problem of … modifications (PTMs) and protein–protein interactions (PPIs). In …
to better solve the problem of … modifications (PTMs) and protein–protein interactions (PPIs). In …
Prediction of protein-protein interactions based on ensemble residual convolutional neural network
H Gao, C Chen, S Li, C Wang, W Zhou, B Yu - Computers in Biology and …, 2023 - Elsevier
… Protein-Protein Interactions (PPIs) play an important role in intercellular communication,
transcription, replication, protein translation, modification… better than the single-feature prediction …
transcription, replication, protein translation, modification… better than the single-feature prediction …
Mape-ppi: Towards effective and efficient protein-protein interaction prediction via microenvironment-aware protein embedding
… Moreover, we propose a novel pre-training strategy, namely … PPI prediction with millions
of PPIs with better effectiveness … 25th ACM SIGKDD international conference on knowledge …
of PPIs with better effectiveness … 25th ACM SIGKDD international conference on knowledge …