A survey on computational models for predicting proteinprotein interactions

L Hu, X Wang, YA Huang, P Hu… - Briefings in …, 2021 - academic.oup.com
… We explain how the performance of PPI prediction can be improved if these issues are … The
robustness of RWS could be decreased by the simple cut-off-based strategy used to maintain …

Assessment of community efforts to advance network-based prediction of proteinprotein interactions

XW Wang, L Madeddu, K Spirohn, L Martini… - Nature …, 2023 - nature.com
… To better demonstrate the performance variability of the different methods, we ranked those
… to guide proteinprotein interaction assays, by prioritizing interactions with a high predicted

Recent advances in predicting proteinprotein interactions with the aid of artificial intelligence algorithms

S Li, S Wu, L Wang, F Li, H Jiang, F Bai - Current Opinion in Structural …, 2022 - Elsevier
… supplement and guide wet-laboratory's experimental work [3]… of reported PPIs has increased
substantially. Especially, the … binding interface prediction method developed by modifying

Evolution of sequence-based bioinformatics tools for protein-protein interaction prediction

M Khatun, W Shoombuatong, MM Hasan… - Current …, 2020 - ingentaconnect.com
… are integrated by using various statistical strategies such as logistic … used in bioinformatics
research to enhance the predictionimprovement of plant-pathogen protein-protein interaction

Learning spatial structures of proteins improves proteinprotein interaction prediction

B Song, X Luo, X Luo, Y Liu, Z Niu… - Briefings in …, 2022 - academic.oup.com
… protein structures improves the performance of proteinprotein interaction (PPI) prediction. …
In the future, we will try to apply the new strategy of protein representation learning method …

Better link prediction for protein-protein interaction networks

HY Yuen, J Jansson - 2020 IEEE 20th International Conference …, 2020 - ieeexplore.ieee.org
… In more advanced use cases, analysis in targeting disruptive PPIs can even introduce new
cancer therapeutic strategies [7]. The basis of meaningful and comprehensive discoveries is …

Predicting ProteinProtein Interactions Based on Ensemble Learning-Based Model from Protein Sequence

X Zhan, M Xiao, Z You, C Yan, J Guo, L Wang, Y Sun… - Biology, 2022 - mdpi.com
better accuracy results than KNN and SVM; it also demonstrates when predicting the
proteinprotein interactions, RF … we proposed has better prediction performance for predicting

A novel ensemble learning-based computational method to predict protein-protein interactions from protein primary sequences

J Pan, S Wang, C Yu, L Li, Z You, Y Sun - Biology, 2022 - mdpi.com
… as a powerful tool to guide researchers to study the functions … ; through this, we are hoping
to better solve the problem of … modifications (PTMs) and proteinprotein interactions (PPIs). In …

Prediction of protein-protein interactions based on ensemble residual convolutional neural network

H Gao, C Chen, S Li, C Wang, W Zhou, B Yu - Computers in Biology and …, 2023 - Elsevier
Protein-Protein Interactions (PPIs) play an important role in intercellular communication,
transcription, replication, protein translation, modificationbetter than the single-feature prediction

Mape-ppi: Towards effective and efficient protein-protein interaction prediction via microenvironment-aware protein embedding

L Wu, Y Tian, Y Huang, S Li, H Lin, NV Chawla… - arXiv preprint arXiv …, 2024 - arxiv.org
… Moreover, we propose a novel pre-training strategy, namely … PPI prediction with millions
of PPIs with better effectiveness … 25th ACM SIGKDD international conference on knowledge …