… PPI network with the ORFs located in different linkage disequilibrium … of high-quality proteomics
and genomics data opens the … (linked to disease risk) and changes in protein expression …

… by our understanding of the interaction networks formed by the … proteome-scale map of the
human protein-protein interaction … translated protein from this mRNA is then covalently linked …

… In terms of PPIs, we generated an XL-based protein interaction network … Comparing our
cross-linking data with the accumulated … abundances were obtained from our previous proteomic …

… Individual interactions within the reconstructed network were … in protein-protein interaction
networks based on their network … to nodes that connect different network communities. In this …

… organization of proteins in networks of physical interactions. Mapping … However, the dynamics
of protein interactions across … efforts to profile the transcriptome, proteome, and epigenome …

… combined with quantitative MS, allow the proteome‐level analysis of complex biological
systems. … , linking KRAS activity to a myriad of adaptive network alterations spanning from core …

… of our HDAC6 network, we mapped transcriptomics data of … here as a bridge that links
polyubiquitinated proteins (via its BUZ … Mapping the transcriptomics and proteomics data from drug …

… as protein-protein interaction, … network model needs more than three layers to connect
genome to phenome via epigenome (DNA layer), transcriptome (RNA layer), proteome (protein …

… cell at the levels of the transcriptome, proteome and interactome (… and stable protein–protein
interactions (PPIs) and protein … , including cross-linking the full proteome of Escherichia coli, …

… networks were inferred in the RNA-seq and proteomics data separately using a random forest
algorithm to score predictors and then the 2 networks … identified in proteomics and black …