… identification of conserved syntenic blocks among species, facilitating studies of the evolutionary
… in the bed format suitable for MCScanx synteny analysis. Similarly, a file containing the …

… The MCScanX toolkit (https://github.com/wyp1125/MCScanX… original MCScanX paper 23 ,
which showed that MCScanX provided … , evolutionary analyses of synteny and colinearity and …

… , including automatic synteny block detection, online … MCScanX, in which pairwise collinear
genes chains are matched to score the adjacent collinear gene pairs, known as anchor genes…

… genes, resulting in the fewest homologous gene pairs. In addition, the synteny blocks extracted
by MCScanX and … We compared the collinearity detection of WGDI and other previous …

… genome alignments, syntenic block detection, and gene tree—… into existing programs for
detecting orthologs, although this is … of gene pairs placed into syntenic blocks by MCScanX and …

… and evolutionary analyses for human functional OR genes. … Then we searched the syntenic
blocks and collinear gene … functional OR genes, we first performed MCScanX-transposed [32]…

… Neutral evolution analysis (Neutrality plot analysis) was used to … of collinear relationship
among 53 iridovirids, BLASTP and … the first study that applied MCScanX in the analysis of virus …

… analysis to detect conserved and variable genomic structures. … analysis, gene family
evolution analysis and collinearity … the MCScanX program (24) to identify collinearity between …

… MCScanX algorithm, anchor pairs and the syntenic blocks to which they belong are stored
in a .collinearity … Synteny detection and network inference for 16 Chlorophyta genomes took …

… species, we detected 5 duplication types in each gene: dispersed, … Synteny offers two
collinearity analysis tools: Toolkit (… For MCscanX, users upload BLAST or GFF files for collinearity …