Behavior-related gene regulatory networks: A new level of organization in the brain
… We therefore expect to see common themes shared between development and behavior …
This result suggested that gene regulation in social bees has increased capacity and …
This result suggested that gene regulation in social bees has increased capacity and …
[HTML][HTML] Pattern formation mechanisms of self-organizing reaction-diffusion systems
… and the design of robust RD networks. For the sake of clarity and simplicity, we define
robust systems as networks that give rise to self-organizing Turing patterns for a wide range of …
robust systems as networks that give rise to self-organizing Turing patterns for a wide range of …
Gene regulatory network inference resources: A practical overview
D Mercatelli, L Scalambra, L Triboli, F Ray… - … (BBA)-Gene Regulatory …, 2020 - Elsevier
… the broad diversity of gene expression patterns in several cellular … network topologies shows
a super-exponential increase with … tested on large-scale gene association networks [77]. …
a super-exponential increase with … tested on large-scale gene association networks [77]. …
Geometry of gene regulatory dynamics
… models for spatial pattern formation by expressing them in … plus diffusion can generate patterns
in an otherwise uniform system. … to computationally evolve gene regulatory networks (25). …
in an otherwise uniform system. … to computationally evolve gene regulatory networks (25). …
Programmed and self-organized flow of information during morphogenesis
C Collinet, T Lecuit - Nature Reviews Molecular Cell Biology, 2021 - nature.com
… Self-organized patterns of BMP2 induce mesenchymal cell aggregates prior to villi formation…
differential growth, tissue elasticity and tissue geometry where genetic programmes and self-…
differential growth, tissue elasticity and tissue geometry where genetic programmes and self-…
Gene regulatory networks controlling vertebrate retinal regeneration
… Likewise, we observed a mouse-specific increase in the promoter accessibility of genes that
were induced … , we included binding motifs with FOS > 1 in any one of ATAC-seq samples. …
were induced … , we included binding motifs with FOS > 1 in any one of ATAC-seq samples. …
Morphogenesis as Bayesian inference: A variational approach to pattern formation and control in complex biological systems
… the entire system, through localized increases in organization (ie, … used to infer genetic
regulatory network structures from available … In this section, we illustrate self organization to non-…
regulatory network structures from available … In this section, we illustrate self organization to non-…
Gene regulatory programmes of tissue regeneration
JA Goldman, KD Poss - Nature Reviews Genetics, 2020 - nature.com
… A deeper mechanistic understanding of the gene regulatory networks of … display increased
accessibility during regeneration. These loci were highly enriched for a DNA sequence motif …
accessibility during regeneration. These loci were highly enriched for a DNA sequence motif …
[HTML][HTML] Nonlinear delay differential equations and their application to modeling biological network motifs
DS Glass, X Jin, IH Riedel-Kruse - Nature communications, 2021 - nature.com
… Our results are divided up into 7 sections corresponding to 7 different regulatory networks
of increasing complexity. An overall reference table (Table 2) is included in the discussion. …
of increasing complexity. An overall reference table (Table 2) is included in the discussion. …
[HTML][HTML] Independence of chromatin conformation and gene regulation during Drosophila dorsoventral patterning
… organization and dorsoventral gene expression. We define tissue-specific enhancers and link
them to expression patterns … regulatory elements and their target promoters increase upon …
them to expression patterns … regulatory elements and their target promoters increase upon …