Transcriptional regulatory network of plant cold-stress responses

S Kidokoro, K Shinozaki, K Yamaguchi-Shinozaki - Trends in Plant Science, 2022 - cell.com
gene expression in the biosynthesis of salicylic acid (SA) and N-hydroxypipecolic acid (NHP)
under normal growth … of these genes, leading to plant immunity and growth inhibition. Other …

Establishing the pattern of the vertebrate limb

C McQueen, M Towers - Development, 2020 - journals.biologists.com
… of pattern, the integration of pattern formation with growth … ) is interpreted into patterns of
gene expression that determine … , which have defined gene regulatory networks. It is becoming …

Regulation of ribosomal protein genes: An ordered anarchy

C Petibon, M Malik Ghulam, M Catala… - Wiley Interdisciplinary …, 2021 - Wiley Online Library
… of the organization of eukaryotic RPGs is also increased by … of the motifs were found in
mammalian RPG introns, while others … that while certain levels of a common regulatory network do …

Deciphering the gene regulatory networks governing cotton fiber initiation and elongation

AU Rehman - International Journal of Research and Advances in …, 2024 - ijraas.com
… these stages is paramount for improving fiber yield and quality… involved in cell wall modification,
cytoskeleton organization, … By comparing gene expression patterns between different …

Rethinking organoid technology through bioengineering

E Garreta, RD Kamm, SM Chuva de Sousa Lopes… - Nature materials, 2021 - nature.com
… organogenesis through the exploitation of the self-organizingpatterns, resulting in symmetry
breaking to start forming specific … The gene regulatory networks that control endothelial cell …

TP63, SOX2, and KLF5 establish a core regulatory circuitry that controls epigenetic and transcription patterns in esophageal squamous cell carcinoma cell lines

YY Jiang, Y Jiang, CQ Li, Y Zhang, P Dakle, H Kaur… - Gastroenterology, 2020 - Elsevier
… part of a core regulatory network that determines chromatin accessibility… A combination of
epigenetic inhibitors slowed growth of … -wide association studies have identified an association

[HTML][HTML] Inferring and perturbing cell fate regulomes in human brain organoids

JS Fleck, SMJ Jansen, D Wollny, F Zenk, M Seimiya… - Nature, 2023 - nature.com
… Self-organizing neural organoids grown from pluripotent … not yet understand the gene
regulatory networks (GRNs) that … for each candidate region through binding-motif matching. The …

Chimera patterns in networks

A Zakharova - Springer, 2020 - Springer
… However, the structures of real-world networks are organized in a more complex way. Recent
results in the area of neuroscience increased the interest in irregular coupling topologies …

Signal propagation in complex networks

P Ji, J Ye, Y Mu, W Lin, Y Tian, C Hens, M Perc, Y Tang… - Physics reports, 2023 - Elsevier
… Secondly, we cover different types of complex networks and their topologies, including
temporal networks, multilayer networks, and neural networks. Next, we cover network time series …

Single-nucleus chromatin accessibility and transcriptomic characterization of Alzheimer's disease

S Morabito, E Miyoshi, N Michael, S Shahin… - … genetics, 2021 - nature.com
… risk loci defined by genome-wide association studies, demonstrating the utility of … regulatory
networks. We used the same set of TF binding motifs as those used in our single-cell TF motif