… the multi-domain structure assembly simulations. I-TASSER-MTD is built on I-TASSER but
substantially extends its ability and accuracy in modeling large multi-domain protein structures …

… This illustrates that 3D aligners as TM-align may overlook homologous structures that are
not … domain orientations and excels at detecting homologous multi-domain structures [12]. …

… To more objectively assess the quality of MSA builders, below we apply these MSAs to
three protein structure modeling experiments, ie residue contact prediction, SS prediction and …

… with the known behaviors of protein structures (for example by combining multiple short …
However, MODELLER can also generate models of complexes of multiple proteins if templates …

… a protein structure, the growth in the number of solved protein structures has lagged far
behind the accumulation of protein … So far, the structures of approximately 0.18 million proteins …

… In addition to the high accuracy of model training enabled by multi-layer neural networks [1],
another important advantage of deep learning is its ability to predict multiple structural …

… New protein function prediction for multiple alignments. Here, we introduce a new … protein
GO-term associations from a multiple alignment. First, for each node group Ci in the alignment, …

… The core idea of US-align is built on the construction of multiple heuristic alignments that
cover … a–d, Performance of oligomeric protein structure alignment by US-align, MM-align and …

… DALI to compare a new structure against previously known protein structures. If significant
… content can be missed (eg, chlorophyll-binding protein). Multiple structural alignment seeks …

… Advanced protein structure prediction requires evolutionary information from multiple
sequence alignments (MSAs) from evolutionary couplings that are not always available. Artificial …