[PDF][PDF] N-GLYCOPEPTIDEATLAS: A DATABASE FOR SPECTRA LIBRARY OF N-LINKED GLYCOSYLAYION

Z Liu - 2020 - jscholarship.library.jhu.edu
… peak in the mass spectrum. In conclusion, database for spectral library of N-linked glycosylation
is … Recently, we introduce a N-linked glycosite database, N-GlycositeAtlas that contain …

[HTML][HTML] DeepNGlyPred: a deep neural network-based approach for human N-linked glycosylation site prediction

SC Pakhrin, KF Aoki-Kinoshita, D Caragea, DB Kc - Molecules, 2021 - mdpi.com
N-GlycositeAtlas database [41] contains more than 14,000 N-… the N-GlycositeAtlas
dataset and tested on N-GlyDE N-linkedresource at Wichita State University and the N-GlycositeAtlas

[HTML][HTML] Mass spectrometry-based N-glycosylation analysis in kidney disease

W Ren, Q Bian, Y Cai - Frontiers in Molecular Biosciences, 2022 - frontiersin.org
… that 242, 352 N-glycoproteins were solely in the db/db mouse model and the STZ mouse …
level of N-linked carbohydrate clearance by hepatocytes. Aberrant N-glycosylation could …

EMNGly: predicting N-linked glycosylation sites using the language models for feature extraction

X Hou, Y Wang, D Bu, Y Wang, S Sun - Bioinformatics, 2023 - academic.oup.com
… datasets extracted from six human and mouse databases. N-GlyDE … valuable resource for
researchers studying glycosylation and … N-GlycositeAtlas training set and utilized it to predict …

O-GlcNAcAtlas: A database of experimentally identified O-GlcNAc sites and proteins

J Ma, Y Li, C Hou, C Wu - Glycobiology, 2021 - academic.oup.com
… and rigorously curated database encapsulating all O-GlcNAc … We expect that O-GlcNAcAtlas
will be a useful resource to … traditional glycosylation (ie, N-glycosylation, O-glycosylation

Mass spectrometry-based analysis of serum N-glycosylation changes in patients with Parkinson's disease

M Xu, H Jin, Z Wu, Y Han, J Chen, C Mao… - ACS chemical …, 2022 - ACS Publications
… Proteins in body fluids that reflect disease status are a good source of biomarkers for PD …
The glycopeptide database of human serum was based on the N-GlycositeAtlas database, (…

[HTML][HTML] In-depth site-specific analysis of N-glycoproteome in human cerebrospinal fluid and glycosylation landscape changes in Alzheimer's disease

Z Chen, Q Yu, Q Yu, J Johnson, R Shipman… - Molecular & Cellular …, 2021 - ASBMB
… (CSF) serves as a rich source for CNS-related disease biomarker … further experimental design
of glycosylation-based disease … approach to the analyses of human CSF samples enabled …

[HTML][HTML] Precision glycoproteomics reveals distinctive N-glycosylation in human spermatozoa

M Xin, S You, Y Xu, W Shi, B Zhu, J Shen, J Wu… - Molecular & Cellular …, 2022 - ASBMB
… N-glycoproteome of human spermatozoa using our recently … contain a number of distinctive
glycoproteins, which are mainly … of N-linked intact glycopeptides in human serum using HILIC …

[HTML][HTML] Glycobiology and proteomics: has mass spectrometry moved the field forward?

S Xu, R Wu - Expert Review of Proteomics, 2023 - Taylor & Francis
glycosylation, more than 3000 glycosylation sites were identified on over 1000 proteins in
human … Based on the proteomic results, some curated databases were established for different …

Precision Structural Interpretation of Site-Specific N-Glycans in Seminal Plasma

M Xin, Y Xu, S You, C Li, B Zhu, J Shen… - Journal of Proteome …, 2022 - ACS Publications
… in human seminal plasma were composed of 773 N-linkedhuman tissues or cells according
to the N-GlycositeAtlas … in these glycans during mass spectrometry-based fragmentation. (36…