Minirmd: accurate and fast duplicate removal tool for short reads via multiple minimizers
… Here we develop minirmd, a de novo tool to remove duplicate reads via multiple rounds of
… with three recent tools that only remove identical reads, ie NGSReadsTreatment, Nubeam-…
… with three recent tools that only remove identical reads, ie NGSReadsTreatment, Nubeam-…
How Error Correction Affects PCR Deduplication: A Survey Based on UMI Datasets of Short Reads
… PCR-deduplication identifies and removes duplicated reads in a fasta/fastq file, leaving only
… removal, NGSReadsTreatment keeps a read if its fingerprint is not found in the cuckoo hash …
… removal, NGSReadsTreatment keeps a read if its fingerprint is not found in the cuckoo hash …
Nubeam-dedup: a fast and RAM-efficient tool to de-duplicate sequencing reads without mapping
… Duplicate reads are a commonplace in sequencing data. The duplications often occur during
… Removing duplicate reads is often one of the important QC steps in a pipeline that performs …
… Removing duplicate reads is often one of the important QC steps in a pipeline that performs …
TrieDedup: a fast trie-based deduplication algorithm to handle ambiguous bases in high-throughput sequencing
… rate of next-generation sequencing … reads that were otherwise identical except for a few
low-quality bases or ambiguous ‘N’s (Additional file 1: Table S2), likely representing duplicates …
low-quality bases or ambiguous ‘N’s (Additional file 1: Table S2), likely representing duplicates …
Whole-genome sequence of the plant-associated bacterium Pseudomonas granadensis CT364 isolated in Seville, Spain
E Cea-Torrescassana, TP Howard… - Microbiology …, 2024 - Am Soc Microbiol
… (7), and duplicate reads by NGSReadsTreatment v1.3 (8). A hybrid assembly combining …
NGSReadstreatment – a cuckoo filter-based tool for removing duplicate reads in NGS data. Sci …
NGSReadstreatment – a cuckoo filter-based tool for removing duplicate reads in NGS data. Sci …
Deduplication Improves Cost-Efficiency and Yields of De Novo Assembly and Binning of Shotgun Metagenomes in Microbiome Research
… The failure to remove duplicate reads can also lead to incorrect conclusions in metagenomic
… Evaluating the necessity of PCR duplicate removal from next-generation sequencing data …
… Evaluating the necessity of PCR duplicate removal from next-generation sequencing data …
Sr2c: a structurally redundant short reads collapser for optimizing DNA data compression
H Sun, H Ma, Y Zheng, H Xie, X Wang… - 2023 IEEE 29th …, 2023 - ieeexplore.ieee.org
… the cascade, was more effective in eliminating duplicate reads than the Before mode. When
… NGSReadsTreatment–a Cuckoo Filter-based tool for removing duplicate reads in NGS data. …
… NGSReadsTreatment–a Cuckoo Filter-based tool for removing duplicate reads in NGS data. …
Complexity analysis of algorithms: A case study on bioinformatics tools
AA de Oliveira Veras - World Journal of Biology and Biotechnology, 2021 - sciplatform.com
… complexity analysis in computational tools for removing redundancy of raw reads from the
DNA … Ngsreadstreatment–a cuckoo filter-based tool for removing duplicate reads in ngs data. …
DNA … Ngsreadstreatment–a cuckoo filter-based tool for removing duplicate reads in ngs data. …
Identification of Conserved and Novel MicroRNAs with their Targets in Garden Pea (Pisum sativum L.) Leaves by High-Throughput Sequencing
QH Khan - Bioinformatics and Biology Insights, 2023 - journals.sagepub.com
… targets by analyzing the next generation sequencing (NGS) data. The raw data obtained
from NGS were processed and 1.38 million high-quality non-redundant reads were retained for …
from NGS were processed and 1.38 million high-quality non-redundant reads were retained for …
Tecnologia assistiva para auxiliar o ensino de genética clássica a deficientes visuais: um estudo de caso na região amazônica
MS OLIVEIRA - 2020 - repositorio.ufpa.br
As Tecnologias Assistivas têm contribuído de forma significativa no processo de inclusão,
abrangendo soluções que contribuem para a construção dinâmica e gradual do processo de …
abrangendo soluções que contribuem para a construção dinâmica e gradual do processo de …