Fungal species concepts in the genomics era

J Xu - Genome, 2020 - cdnsciencepub.com
… , and phylogenetic species concepts that have been applied to delineate fungal species (…
, I highlight some of the features of fungi and their implications for fungal species concepts. …

[HTML][HTML] Early-diverging fungal phyla: taxonomy, species concept, ecology, distribution, anthropogenic impact, and novel phylogenetic proposals

K Voigt, TY James, PM Kirk, ALCMA Santiago… - Fungal Diversity, 2021 - Springer
… of the basal fungi are still unresolved. In this article, we review the recent taxonomy of the
basal fungi and re-evaluate the relationships among early-diverging lineages of fungal phyla. …

What are fungal species and how to delineate them?

KWT Chethana, IS Manawasinghe, VG Hurdeal… - Fungal Diversity, 2021 - Springer
… However, only a few mycologists are aware that phylogenetic species criteria can mask …
different species recognition criteria, we recommend a set of approaches for defining species

Species concepts of Dothideomycetes: classification, phylogenetic inconsistencies and taxonomic standardization

D Pem, R Jeewon, KWT Chethana, S Hongsanan… - Fungal Diversity, 2021 - Springer
… Both species concepts and recognition are essential topics in taxonomic studies and other
… used species concepts, focusing on morphological, ecological, biological and phylogenetic

Defining a species in fungal plant pathology: beyond the species level

IS Manawasinghe, AJL Phillips, J Xu, A Balasuriya… - Fungal Diversity, 2021 - Springer
… , the phylogenetic species concept has become dominant in species delineation in fungal
… Genealogical concordance phylogenetic species recognition (GCPSR) is another approach …

Delimiting species in Basidiomycota: a review

B Cao, D Haelewaters, N Schoutteten, D Begerow… - Fungal Diversity, 2021 - Springer
… , a perfect species concept does not exist for Fungi. Here, we review the species concepts
… of Fungi that contains some of the best known species of mushrooms, rusts, smuts, and jelly …

What is a species in fungal plant pathogens?

RS Jayawardena, KD Hyde, ARG de Farias… - Fungal Diversity, 2021 - Springer
phylogenetic species recognitionPhylogenetic Species Recognition, given enough
independent samples per lineage are included. Among the numerous complexes of sibling species

[HTML][HTML] The evolving species concepts used for yeasts: from phenotypes and genomes to speciation networks

T Boekhout, MC Aime, D Begerow, T Gabaldón… - Fungal diversity, 2021 - Springer
species concept using comparisons of parts of the ribosomal DNA. At present phylogenetic
species concepts … other genes are universally applied in fungal taxonomy, including yeasts, …

[HTML][HTML] Species in lichen-forming fungi: balancing between conceptual and practical considerations, and between phenotype and phylogenomics

R Lücking, SD Leavitt, DL Hawksworth - Fungal Diversity, 2021 - Springer
… Overall, we consider that species delimitation in lichen-forming fungi has advanced dramatically
over the past three decades, resulting in a solid framework, but that empirical evidence …

Are species concepts outdated for fungi? Intraspecific variation in plant-pathogenic fungi illustrates the need for subspecific categorization.

E Monte, R Hermosa… - … bacteria and fungi, 2021 - cabidigitallibrary.org
… of species is the phylogenetic species concept (PSC). A phylogenetic … species recognition,
based either on SGC or CBD approaches, is the species concept most widely applied to fungi. …