Dynamics and timing of diversification events of ciliated eukaryotes from a large phylogenomic perspective

C Jiang, S Gu, T Pan, X Wang, W Qin, G Wang… - … and Evolution, 2024 - Elsevier
phylogenetic signals that can currently be discerned. The advancement of molecular-based
phylogenies has enabled significant restructuring of the ciliate Tree … , phylogenomics-based

… of Pyruvate-Ferredoxin Oxidoreductase; a Redox Enzyme Involved in the Pharmacological Activation of Nitro-Based Prodrugs in Protozoan and Bacterial Species

S Duwor, P Mäser, D Brites - 2023 - preprints.org
… Mega format to construct phylogenetic trees using the neighbor… of representative protozoan
and bacterial species were … the phylogenomics-based reconstruction of the protozoan

Phylogenomic Insights into the Evolution and Origin of Nematoda

X Qing, YM Zhang, S Sun, M Ahmed, WS Lo, W Bert… - bioRxiv, 2023 - biorxiv.org
… In this study, we reconstructed the first phylogenomic tree for phylum Nematoda. A 20 total
… , and 23 topologies are similar across reconstruction parameters. Few conflicts were found …

Total Ortholog Median Matrix as an alternative unsupervised approach for phylogenomics based on evolutionary distance between protein coding genes

SR Maruyama, LA Rogerio, PD Freitas… - Scientific reports, 2021 - nature.com
protozoa, hematophagous Diptera vectors and Primates. Our approach was robust and
efficacious to reconstruct the phylogenetic … Molecular phylogenetic trees are based on mutations …

Commensal intestinal protozoa—underestimated members of the gut microbial community

M Dubik, B Pilecki, JB Moeller - Biology, 2022 - mdpi.com
… We argue that some protozoa species might be beneficial inhabitants of the … protozoa
colonization, their interaction with the bacterial microbiota, and the crosstalk between the protozoa

Plastogenomics provides a tool to study phylogenetic interrelationships of monilophytes: a review

A Kumar, P Giri, PL Uniyal - Ferns: Biotechnology, Propagation, Medicinal …, 2022 - Springer
… In the recent years, phylogenomics based on chloroplast … described in organisms from
unicellular protozoa to man and can … for phylogenetic reconstruction and might even confound …

Proteins involved in the biosynthesis of lipophosphoglycan in Leishmania: a comparative genomic and evolutionary analysis

LG Azevedo, ATL de Queiroz, A Barral, LA Santos… - Parasites & vectors, 2020 - Springer
… Using a phylogenomics-based framework, we identified a … are protozoan parasites belonging
to the family Trypanosomatidae. … The phylogenetic reconstruction was performed from the …

Major revisions in arthropod phylogeny through improved supermatrix, with support for two possible waves of land invasion by chelicerates

KE Noah, J Hao, L Li, X Sun, B Foley… - Evolutionary …, 2020 - journals.sagepub.com
… It is remarkable that the PhyML tree and the RAxML tree are not only identical in topology,
but also indistinguishable in branch lengths. While we do expect phylogenetic reconstruction

Evolutionary History of Oxysterol-Binding Proteins Reveals Complex History of Duplication and Loss in Animals and Fungi

RP Singh, YP Poh, SD Sinha, JG Wideman - Contact, 2023 - journals.sagepub.com
… By reconstructing phylogenies of eukaryote OSBPs, we show … and holozoan trees was
reconstructed with high support (ie, … were formed in the Opisthokont tree, structural and functional …

Genomic analyses reveal moderate levels of ploidy, high heterozygosity and structural variations in a Colombian isolate of Leishmania (Leishmania) amazonensis

LH Patino, C Muskus, M Muñoz, JD Ramírez - Acta tropica, 2020 - Elsevier
… The phylogenetic trees were obtained using FastTree version … phylogenetic intra e
inter species relationship in Leishmania amazonensis. Phylogenetic reconstructions at inter-species