Dynamics and timing of diversification events of ciliated eukaryotes from a large phylogenomic perspective
C Jiang, S Gu, T Pan, X Wang, W Qin, G Wang… - … and Evolution, 2024 - Elsevier
… phylogenetic signals that can currently be discerned. The advancement of molecular-based
phylogenies has enabled significant restructuring of the ciliate Tree … , phylogenomics-based …
phylogenies has enabled significant restructuring of the ciliate Tree … , phylogenomics-based …
… of Pyruvate-Ferredoxin Oxidoreductase; a Redox Enzyme Involved in the Pharmacological Activation of Nitro-Based Prodrugs in Protozoan and Bacterial Species
S Duwor, P Mäser, D Brites - 2023 - preprints.org
… Mega format to construct phylogenetic trees using the neighbor… of representative protozoan
and bacterial species were … the phylogenomics-based reconstruction of the protozoan …
and bacterial species were … the phylogenomics-based reconstruction of the protozoan …
Phylogenomic Insights into the Evolution and Origin of Nematoda
… In this study, we reconstructed the first phylogenomic tree for phylum Nematoda. A 20 total
… , and 23 topologies are similar across reconstruction parameters. Few conflicts were found …
… , and 23 topologies are similar across reconstruction parameters. Few conflicts were found …
Total Ortholog Median Matrix as an alternative unsupervised approach for phylogenomics based on evolutionary distance between protein coding genes
… protozoa, hematophagous Diptera vectors and Primates. Our approach was robust and
efficacious to reconstruct the phylogenetic … Molecular phylogenetic trees are based on mutations …
efficacious to reconstruct the phylogenetic … Molecular phylogenetic trees are based on mutations …
Commensal intestinal protozoa—underestimated members of the gut microbial community
M Dubik, B Pilecki, JB Moeller - Biology, 2022 - mdpi.com
… We argue that some protozoa species might be beneficial inhabitants of the … protozoa
colonization, their interaction with the bacterial microbiota, and the crosstalk between the protozoa …
colonization, their interaction with the bacterial microbiota, and the crosstalk between the protozoa …
Plastogenomics provides a tool to study phylogenetic interrelationships of monilophytes: a review
… In the recent years, phylogenomics based on chloroplast … described in organisms from
unicellular protozoa to man and can … for phylogenetic reconstruction and might even confound …
unicellular protozoa to man and can … for phylogenetic reconstruction and might even confound …
Proteins involved in the biosynthesis of lipophosphoglycan in Leishmania: a comparative genomic and evolutionary analysis
… Using a phylogenomics-based framework, we identified a … are protozoan parasites belonging
to the family Trypanosomatidae. … The phylogenetic reconstruction was performed from the …
to the family Trypanosomatidae. … The phylogenetic reconstruction was performed from the …
Major revisions in arthropod phylogeny through improved supermatrix, with support for two possible waves of land invasion by chelicerates
KE Noah, J Hao, L Li, X Sun, B Foley… - Evolutionary …, 2020 - journals.sagepub.com
… It is remarkable that the PhyML tree and the RAxML tree are not only identical in topology,
but also indistinguishable in branch lengths. While we do expect phylogenetic reconstruction …
but also indistinguishable in branch lengths. While we do expect phylogenetic reconstruction …
Evolutionary History of Oxysterol-Binding Proteins Reveals Complex History of Duplication and Loss in Animals and Fungi
… By reconstructing phylogenies of eukaryote OSBPs, we show … and holozoan trees was
reconstructed with high support (ie, … were formed in the Opisthokont tree, structural and functional …
reconstructed with high support (ie, … were formed in the Opisthokont tree, structural and functional …
Genomic analyses reveal moderate levels of ploidy, high heterozygosity and structural variations in a Colombian isolate of Leishmania (Leishmania) amazonensis
… The phylogenetic trees were obtained using FastTree version … phylogenetic intra e
inter species relationship in Leishmania amazonensis. Phylogenetic reconstructions at inter-species …
inter species relationship in Leishmania amazonensis. Phylogenetic reconstructions at inter-species …