… 1A–1C) and coverage and selected slow-evolving over fast-evolving lineages within phyla.
Reconstructing the phylogeny of fungi Two trees were inferred from the full dataset, one by …

… the performance of the FFP method is much worse than concatenation- and coalescent-based
approaches for reconstructing the phylogeny of major and ancient lineages 40 , such as …

… set of fungal species offers an opportunity to reconstruct a … a robust phylogenetic framework
to explore fungal evolution and … of the fungal phylogeny. We find that most parts of the …

… Using a range of reconstruction methods, we were able to resolve many … fungal lineages
(Table S1). All proteins were carefully inspected by reconstructing single-protein phylogenies to …

… For that, among-site substitution rates were inferred using IQ-TREE under the -wsr option …
We then reconstructed phylogenetic trees for all these subsets using IQ-TREE with the same …

… In this study, we reconstructed the gene family evolution in the Holomycota using 123 whole
… We inferred a species phylogeny by maximum likelihood analysis of a supermatrix of 272 …

… Zygomycete genomes that are well assembled (BUSCO score above 80%) and represent
unique phylogenetic positions were selected to reconstruct the backbone phylogenomic tree. (…

… study of 84 fungal genomes showed that our result is consistent with the phylogeny inferred
using an … and Methods for details), we reconstructed them as continuous traits on the species …

… provides new insights into the complex evolutionary history of the fungal cell wall. We analyzed
… Reconstructing the early evolution of Fungi using a six-gene phylogeny. Nature 443:818–…

The study of evolution is limited by the techniques available to do … use of the fossil record,
molecular phylogenetics can provide a detailed characterization of evolutionary histories using …