[PDF][PDF] Advances in transcriptome analyses using RNA sequencing technology in soybean plants [Glycine max]

J Min, M Wagner, T Kasamias - Computational Molecular …, 2020 - scholar.archive.org
… and development, plant mineral nutrients, responses to … The SFGD includes a gene co-expression
regulatory network … gene function data. They applied the method to the RNA-seq …

Integration of RNA-Seq profiling with genome-wide association study predicts candidate genes for oil accumulation in soybean

Y Niu, G Zhang, F Wan, YM Zhang - Crop and Pasture Science, 2020 - CSIRO Publishing
… six soybean accessions varying in oil content and composition. We first compared the
transcriptome … effective in mining key genes and important metabolic pathways for oil-related traits. …

Genetic and genomic resources for soybean breeding research

J Petereit, JI Marsh, PE Bayer, MF Danilevicz… - Plants, 2022 - mdpi.com
… including genome and transcriptome sequencing, functional assays, … Finally, data from the
full set of 2898 accessions were … SFGDSoybean Functional Genomics Database Integration-…

4D genetic networks reveal the genetic basis of metabolites and seed oil-related traits in 398 soybean RILs

X Han, YW Zhang, JY Liu, JF Zuo, ZC Zhang… - … for Biofuels and …, 2022 - Springer
information in ARALIP and soybean pathway annotation in SFGD, 70 candidate genes
were mined … regulatory network using metabolome and transcriptome data sets, which were …

DhuFAP: a platform for gene functional analysis in Dendrobium huoshanense

Q Xiao, Q Pan, J Li, J Zhang, J Yang - BMC genomics, 2024 - Springer
… the exploration of functional information pertaining to D. … leverage this data, we curated
transcriptome data obtained … developed a comprehensive gene function analysis platform, …

PlantGSAD: a comprehensive gene set annotation database for plant species

X Ma, H Yan, J Yang, Y Liu, Z Li, M Sheng… - Nucleic Acids …, 2022 - academic.oup.com
… omics data sets generated from high-throughput transcriptomics … PlantGSAD supports 44
species across nine functional … , so functional annotations of the genes involved in the soybean

[HTML][HTML] Transcriptomics of Chinese Sapium Sebiferum (L.) Roxb seed to reveal key enzymes involved in oil accumulation

Y Yu, Y Liu - Oil Crop Science, 2020 - Elsevier
… provided comprehensive gene expression information of … than cotton seed, flax, soybean
and Jatropha curcas. It has … All rights are reserved, including those for text and data mining, …

[图书][B] Bradybase: a comprehensive genomics database for soybean root-nodulating Bradyrhizobium species

M Sharma - 2021 - search.proquest.com
… , data mining capabilities and other resources specific to … data including genomic sequence
data, gene transcriptome … , gene functional annotations, and gene ontology for the soybean

The current developments in medicinal plant genomics enabled the diversification of secondary metabolites' biosynthesis

MM Alami, Z Ouyang, Y Zhang, S Shu, G Yang… - International journal of …, 2022 - mdpi.com
… Nevertheless, data mining has been streamlined, speeding … Transcriptomics, phenolic
metabolomics, and functional gene … With access to extensive transcriptome data sets, expression …

New insights into Arabidopsis transcriptome complexity revealed by direct sequencing of native RNAs

S Zhang, R Li, L Zhang, S Chen, M Xie… - Nucleic acids …, 2020 - academic.oup.com
… the identification and functional characterization of novel … transcriptome analyses have
been conducted using ONT Direct RNA Sequencing (DRS) in Arabidopsis (4). A comprehensive