Large-scale phylogenomic analyses reveal the monophyly of bryophytes and neoproterozoic origin of land plants
D Su, L Yang, X Shi, X Ma, X Zhou… - Molecular Biology …, 2021 - academic.oup.com
… In this study, we inferred the phylogeny and divergence … and the time of origin of land plants.
We increased taxon sampling … longer than 0.8 for reducing deep paralogs, and only retained …
We increased taxon sampling … longer than 0.8 for reducing deep paralogs, and only retained …
[HTML][HTML] Divergent evolutionary trajectories of bryophytes and tracheophytes from a complex common ancestor of land plants
… We first infer a rooted phylogeny of land plants using … gene families since their divergence,
the largest loss observed on … curated sequence sets and inferred phylogenetic trees for these …
the largest loss observed on … curated sequence sets and inferred phylogenetic trees for these …
Phylogeny of Land Plants: a Case Study of Deep-Time Reconstructions
YL Qiu, BD Mishler - 2024 - preprints.org
… and vascular plants as inferred in phylogenetic studies … The other approach was to infer root
placement on a data set of … (the first diverging lineage) of the land plant phylogeny: hornworts…
placement on a data set of … (the first diverging lineage) of the land plant phylogeny: hornworts…
Comprehensive phylogenomic time tree of bryophytes reveals deep relationships and uncovers gene incongruences in the last 500 million years of diversification
J Bechteler, G Peñaloza‐Bojacá, D Bell… - American Journal of …, 2023 - Wiley Online Library
… inferred the species phylogeny from gene tree analyses using concatenated and coalescence
approaches, assessed gene conflict, and estimated the timing of divergences … land plant …
approaches, assessed gene conflict, and estimated the timing of divergences … land plant …
[HTML][HTML] The evolutionary emergence of land plants
… this phylogenetic context, concluding that many vascular plant (… last common ancestor of
living land plants (embryophytes). … Drawing this evidence together, we infer the embryophyte …
living land plants (embryophytes). … Drawing this evidence together, we infer the embryophyte …
Phylogenetic conflicts, combinability, and deep phylogenomics in plants
… other contentious relationships across land plants, would provide … We inferred gene trees
for each of the 852 genes using IQ-… the origin and divergence times of eudicots and monocots. …
for each of the 852 genes using IQ-… the origin and divergence times of eudicots and monocots. …
Phylogenomics and diversification drivers of the Eastern Asian–Eastern North American disjunct Podophylloideae
WQ Ye, SS Zhu, HP Comes, T Yang, L Lian… - Molecular Phylogenetics …, 2022 - Elsevier
… of plants often reveal unexpectedly deep divergences … These 613 putative SCOGs were
used to infer phylogenetic … We propose that these divergence events in the HHM region …
used to infer phylogenetic … We propose that these divergence events in the HHM region …
Large‐scale genomic sequence data resolve the deepest divergences in the legume phylogeny and support a near‐simultaneous evolutionary origin of all six …
… Phylogenomics is increasingly used to infer deep-branching relationships … Phylogenomic
studies often focus on difficult-to-resolve, deep relationships in the Tree of Life (eg in land plants…
studies often focus on difficult-to-resolve, deep relationships in the Tree of Life (eg in land plants…
[HTML][HTML] Phylogenomics and the rise of the angiosperms
… Taken together, our extensive sampling combined with advanced phylogenomic
methods shows the deep history and full complexity in the evolution of a megadiverse clade. …
methods shows the deep history and full complexity in the evolution of a megadiverse clade. …
Bryophytes are not early diverging land plants
SF McDaniel - New Phytologist, 2021 - Wiley Online Library
… , have absolutely no phylogenetic or topological meaning, … The rich history that we can
infer using genomic or … us to peer deep into history, not because any extant plants represent …
infer using genomic or … us to peer deep into history, not because any extant plants represent …