[HTML][HTML] A first draft genome of holm oak (Quercus ilex subsp. ballota), the most representative species of the Mediterranean forest and the Spanish agrosylvopastoral …

MD Rey, M Labella-Ortega… - Frontiers in Molecular …, 2023 - frontiersin.org
… ilex reference genome. Here, we introduce the first draft genome assembly of Q. ilex
using long-read sequencing (PacBio). The assembled nuclear haploid …

A first draft genome of Holm oak (Quercus ilex L.), the most representative species of the Mediterranean forest and the Spanish agrosilvopastoral ecosystem “dehesa”

MD Rey, M Labella-Ortega, VM Guerrero-Sánchez… - BioRxiv, 2022 - biorxiv.org
… ilex reference genome. Here, we introduce the first draft genome assembly of Q. ilex
using long-read sequencing (PacBio). The assembled nuclear haploid …

CorkOakDB—the cork oak genome database portal

C Arias-Baldrich, MC Silva, F Bergeretti, I Chaves… - Database, 2020 - academic.oup.com
… transcriptome for cork oak, based on Expressed Sequence Tags (… cork oak have also been
published in the meantime (5–10). More recently, in 2018, the first draft genome of cork oak

[HTML][HTML] A chromosome-level genome assembly of the Chinese cork oak (Quercus variabilis)

B Han, L Wang, Y Xian, XM Xie, WQ Li… - Frontiers in Plant …, 2022 - frontiersin.org
… The whole-genome sequencing data reported in the study are deposited into CNGB
Sequence Archive (CNSA) (Guo et al., 2020) of China National GeneBank DataBase (CNGBdb) (…

[HTML][HTML] An improved reference genome and first organelle genomes of Quercus suber

A Usié, O Serra, PM Barros, P Barbosa, C Leão… - … Genetics & Genomes, 2023 - Springer
… Moreover, the Illumina PE and MP reads and the RNA-Seq data produced to build the
draft genome version of cork oak were also used in this work (Supplementary Table 1). …

Niche evolution in a northern temperate tree lineage: biogeographical legacies in cork oaks (Quercus section Cerris)

T Denk, GW Grimm, AL Hipp, JM Bouchal… - Annals of …, 2023 - academic.oup.com
… to reconstruct the biogeographical history of the cork oaks. Based on habitats, climatic
preferences and leaf morphologies of modern and fossil cork oaks, we investigate the history of …

Chromosome-level genome assembly of Quercus variabilis provides insights into the molecular mechanism of cork thickness

E Chang, W Guo, J Chen, J Zhang, Z Jia… - Plant Science, 2023 - Elsevier
… It is mainly supplied by two cork oak species, Quercus suber (evergreen) in the Mediterranean
region and Q. variabilis (deciduous) in East Asia (Leite et al., 2020). As a nonconductive …

[HTML][HTML] High-quality genome and methylomes illustrate features underlying evolutionary success of oaks

VL Sork, SJ Cokus, ST Fitz-Gibbon, AV Zimin… - Nature …, 2022 - nature.com
… An initial draft genome (version 1.0) 9 was assembled from small (≈150× … sequence
placed in a chromosome is 96% in valley oak vs. 88% in pedunculate oak (and 0% in cork oak

[HTML][HTML] Telomere-to-telomere and haplotype-resolved genome assembly of the Chinese cork oak (Quercus variabilis)

L Wang, LL Li, L Chen, RG Zhang, SW Zhao… - Frontiers in Plant …, 2023 - frontiersin.org
… This is likely associated with the high heterozygosity of Chinese cork oak. Further … Chinese
cork oak genome obtained in this study provides a valuable resource for tree genomics

Phellem versus xylem: genome-wide transcriptomic analysis reveals novel regulators of cork formation in cork oak

ST Lopes, D Sobral, B Costa, P Perdiguero… - Tree …, 2020 - academic.oup.com
… a genome-wide transcriptomic analysis of cork oak phellem and … first genome-wide comparison
of these tissues in cork oak, … The recent release of the draft genome of cork oak provides …