Transcription modulates chromatin dynamics and locus configuration sampling
… For this, we discriminate between two chromatin states, one … strongly on the size of the
chromatin segment being tracked. … real-time quantitative reverse transcription PCR (qRT–PCR); …
chromatin segment being tracked. … real-time quantitative reverse transcription PCR (qRT–PCR); …
Mechanoepigenetic regulation of extracellular matrix homeostasis via Yap and Taz
DL Jones, GF Hallström, X Jiang… - Proceedings of the …, 2023 - National Acad Sciences
… /Taz in regulating chromatin state, we administered doxycycline … Quantitative real-time PCR
(qRT-PCR) was completed using … used to visualize BigWig files on the mm10 genome track. …
(qRT-PCR) was completed using … used to visualize BigWig files on the mm10 genome track. …
Unraveling the mechanism of centromere inactivation in human aging
… In this study, we track the fate of centromeres during aging in … across the various chromatin
states (euchromatin and … (D) Quantitative real-time PCR for centromeric transcripts using …
states (euchromatin and … (D) Quantitative real-time PCR for centromeric transcripts using …
Epigenetic dynamics during capacitation of naïve human pluripotent stem cells
J Agostinho de Sousa, CW Wong, I Dunkel… - Science …, 2023 - science.org
… Other chromatin states increased DNA methylation levels … The repetitive regions were obtained
from the track “RepeatMasker,” … TO performed quantitative real-time PCR and helped with …
from the track “RepeatMasker,” … TO performed quantitative real-time PCR and helped with …
Massively multiplex single-molecule oligonucleosome footprinting
NJ Abdulhay, CP McNally, LJ Hsieh, S Kasinathan… - Elife, 2020 - elifesciences.org
… real-time sequencing could detect m6dA deposited on … depleted for each chromatin state.
Tests qualitatively appearing to be … We also kept track of the molecules where find_peaks could …
Tests qualitatively appearing to be … We also kept track of the molecules where find_peaks could …
Native RNA Immunoprecipitation (RIP) for Precise Detection and Quantification of Protein-Interacting RNA
… of a protein followed by monitoring the RNA molecules that bind to it. … RIP by the use of
semi-qPCR or real-time polymerase chain reaction (… Make sure to use a kit with DNase treatment. …
semi-qPCR or real-time polymerase chain reaction (… Make sure to use a kit with DNase treatment. …
BS-Seq reveals major role of differential CHH methylation during leaf rust resistance in wheat (Triticum aestivum L.)
… Chromatin states associated with DNA methylation were also … histone modifications were
prepared using controls for two histone … was learned using LearnModel for 18 chromatin states, …
prepared using controls for two histone … was learned using LearnModel for 18 chromatin states, …
[PDF][PDF] Massively parallel characterization of CRISPR activator efficacy in human induced pluripotent stem cells and neurons
Q Wu, J Wu, K Karim, X Chen, T Wang, S Iwama… - Molecular Cell, 2023 - cell.com
… using six histone modifications to define ten chromatin states … (C) Track plot for each
CRISPRa perturbation. The gene … , 1 μg of RNA were treated with TURBOTM DNase (Thermo) …
CRISPRa perturbation. The gene … , 1 μg of RNA were treated with TURBOTM DNase (Thermo) …
Acetyl-CoA metabolism drives epigenome change and contributes to carcinogenesis risk in fatty liver disease
G Assante, S Chandrasekaran, S Ng, A Tourna… - Genome medicine, 2022 - Springer
… chromatin was performed as for the ChIP-seq for cells but with pulses increased to 4 for tissue.
Real-time … of IHH cells cultured in control or oleic acid-supplemented media after DNAse I …
Real-time … of IHH cells cultured in control or oleic acid-supplemented media after DNAse I …
Cell-free DNA in plasma as an essential immune system regulator
M Korabecna, A Zinkova, I Brynychova, B Chylikova… - Scientific reports, 2020 - nature.com
… by monitoring the therapeutic effects of venous DNase I … C for 30 min to degrade chromatin.
The obtained protein mixtures were … in hemodialysis quantified by real-time PCR. Clin. Chem. …
The obtained protein mixtures were … in hemodialysis quantified by real-time PCR. Clin. Chem. …