Transposable elements as essential elements in the control of gene expression

A Gebrie - Mobile DNA, 2023 - Springer
… time that Drosophila Fragile X protein is necessary for transposon inactivation in the larval
… , and have widely permissive chromatin landscapes that may further enhance TE activation …

Transposable elements as a potent source of diverse cis-regulatory sequences in mammalian genomes

V Sundaram, J Wysocka - Philosophical Transactions of …, 2020 - royalsocietypublishing.org
… ancestral form carried their own cis-regulatory sequences … learned that mammalian regulatory
landscapes are extremely … an alternative promoter either upstream or downstream from …

Meeting our Makers: Uncovering the cis-regulatory activity of transposable elements using statistical learning

CDST Pulver - 2024 - infoscience.epfl.ch
… differentiation-specific TE (LTR6B) located upstream of the PRC2 subunit RBBP4 … cis-acting
regulatory elements, contributing to shape the chromatin and transcriptional landscape of …

Roles of transposable elements in the regulation of mammalian transcription

R Fueyo, J Judd, C Feschotte, J Wysocka - Nature reviews Molecular …, 2022 - nature.com
… have broadly permissive chromatin landscapes that may further facilitate … protein CTCF has
been demonstrated to demarcate many TAD boundaries, to mediate chromatin loop formation

Host gene regulation by transposable elements: the new, the old and the ugly

R Enriquez-Gasca, PA Gould, HM Rowe - Viruses, 2020 - mdpi.com
… of protein-coding genes through their regulatory elements. … and human examples and discuss
how this can shape our … to insertions of IAP elements either upstream or within an intron of …

Role of transposable elements in gene regulation in the human genome

A Ali, K Han, P Liang - Life, 2021 - mdpi.com
… TEs in the gene upstream regulatory elements. The study by … The same study further
identified that for two protein-coding … MITEs form a stem-loop structure, which can be recognized …

“What you need, baby, I got it”: Transposable elements as suppliers of cis-operating sequences in drosophila

R Moschetti, A Palazzo, P Lorusso, L Viggiano… - Biology, 2020 - mdpi.com
… Repeated DNA in the form of a simple or complex minisatellite … Indeed, fly populations carrying
an Accord insertion upstreamtransposon to recruit the centromeric protein CENP-A [106]. …

Regulatory transposable elements in the encyclopedia of DNA elements

AY Du, JD Chobirko, X Zhuo, C Feschotte… - Nature …, 2024 - nature.com
… an important role in shaping the human regulatory genome. … to characterize the landscape
of CREs in the human genome, … Percentages of common variant overlap for upstream and …

Species-specific chromatin landscape determines how transposable elements shape genome evolution

Y Huang, H Shukla, YCG Lee - Elife, 2022 - elifesciences.org
Transposable elements (TEs) are selfish genetic parasites that increase their copy number
… of host chromatin landscapes in shaping genome evolution through the epigenetic effects of …

Transposable elements in mammalian chromatin organization

HA Lawson, Y Liang, T Wang - Nature Reviews Genetics, 2023 - nature.com
… it acts as an insulator to prevent upstream expansion of the … as docking sites for protein
complexes that modify histones. … DNA sequence that shapes the gene regulatory landscape by …