Advances in the discovery of new chemotypes through ultra-large library docking

F Potlitz, A Link, L Schulig - Expert opinion on drug discovery, 2023 - Taylor & Francis
… can subsequently be made, and the results from docking can be refined [Citation7]. However…
point for discovering new chemotypes [Citation17]. A very recent example is the discovery of …

Artificial intelligence–enabled virtual screening of ultra-large chemical libraries with deep docking

F Gentile, JC Yaacoub, J Gleave, M Fernandez… - Nature …, 2022 - nature.com
… suitability of the docking program to prioritize active molecules from an ultra-large library.
Hence, … be challenging to discover active molecules from DD of a library of a billion molecules if …

Keeping pace with the explosive growth of chemical libraries with structure‐based virtual screening

J Kuan, M Radaeva, A Avenido… - Wiley …, 2023 - Wiley Online Library
… force docking of ultra-large libraries into … docking over the conventional screens of in-stock
libraries, reporting significantly higher hit rates and the discovery of novel potent chemotypes. …

Crystal structures of the σ2 receptor template large-library docking for selective chemotypes active in vivo

A Alon, J Lyu, JM Braz, TA Tummino, V Craik… - bioRxiv, 2021 - biorxiv.org
… for rapid discovery of in vivo active and selective probes to study under-explored areas of
biology using structurebased screens of diverse, ultra-large libraries following the elucidation …

Modeling the expansion of virtual screening libraries

J Lyu, JJ Irwin, BK Shoichet - Nature Chemical Biology, 2023 - nature.com
… although docking campaigns with the new ultra-large libraries … hit rate, it might improve
success later in drug discovery. … how dock scores of top 5,000, number of chemotypes in top …

Virtual Screening of a Chemically Diverse “Superscaffold” Library Enables Ligand Discovery for a Key GPCR Target

K Grotsch, AV Sadybekov, S Hiller, S Zaidi… - ACS Chemical …, 2024 - ACS Publications
… of the discovered lead chemotypes. In this study, we explore … by generating and docking
ultra-large libraries of compounds … our study that ultra-large virtual combinatorial libraries, even …

Library size in virtual screening: is it truly a number's game?

M Kontoyianni - Expert Opinion on Drug Discovery, 2022 - Taylor & Francis
discovery, let us look at its current status. For those who have followed recent advances in
ultra-large chemical libraries and giga-docking… in order to identify novel chemotypes. In a …

Structure-based virtual screening of ultra-large library yields potent antagonists for a lipid GPCR

AA Sadybekov, RL Brouillette, E Marin, AV Sadybekov… - Biomolecules, 2020 - mdpi.com
docking of CysLT1R and CysLT2R receptors in ultra-large virtual ligand screening to find
-12359 suggests that new lead chemotypes of such inhibitors can be discovered via structure-…

Targeting in silico GPCR conformations with ultra-large library screening for hit discovery

D Sala, H Batebi, K Ledwitch, PW Hildebrand… - Trends in …, 2023 - cell.com
ultra-large virtual libraries in combination with efficient docking algorithms has improved
hit discovery … for analogs of the active chemotypes in the full library by using the Tanimoto …

[HTML][HTML] Structure-based virtual screening of vast chemical space as a starting point for drug discovery

J Carlsson, A Luttens - Current Opinion in Structural Biology, 2024 - Elsevier
Ultra-large library docking The most straightforward structure-based approach to evaluate
ultra-large libraries is to simply dock … of molecules bearing a specific chemotype can still be …