Survival and selection biases in early animal evolution and a source of systematic overestimation in molecular clocks

GE Budd, RP Mann - Interface Focus, 2020 - royalsocietypublishing.org
… that the uncertainty around the true time of appearance is not … earlier, even when the
uncertainty limits on the estimates are … results directly into a timescale that would be comparable to …

Two notorious nodes: a critical examination of relaxed molecular clock age estimates of the bilaterian animals and placental mammals

GE Budd, RP Mann - Systematic biology, 2024 - academic.oup.com
… case does the molecular clock analysis provide any evidence for an origin of the clade …
Uncertainty in the timing of origin of animals and the limits of precision in molecular timescales

Molecular clocks without rocks: new solutions for old problems

GP Tiley, JW Poelstra, M Dos Reis, Z Yang, AD Yoder - Trends in Genetics, 2020 - cell.com
… a molecular clock, thus improving the accuracy of divergence … the history of life on earth,
including the timing of life history … Recent Bayesian methods have incorporated uncertainty in …

A species-level timeline of mammal evolution integrating phylogenomic data

S Álvarez-Carretero, AU Tamuri, M Battini… - Nature, 2022 - nature.com
… other contentious cases of animal and plant diversifications that … datasets enable inference
of precise timelines that can be used to … Conversely, we have shown that uncertainty in time

Two notorious nodes: a critical examination of MCMCTree relaxed molecular clock estimates of the bilaterian animals and placental mammals

GE Budd, RP Mann - bioRxiv, 2022 - biorxiv.org
… on most geological time scales is essentially simultaneously. In … Pg boundary, comparable
to the stem diversity at the same time. … We therefore believe that only evidenced uncertainties

Rocks and clocks revised: new promises and challenges in dating the primate tree of life

L Pozzi, A Penna - Evolutionary Anthropology: Issues, News …, 2022 - Wiley Online Library
… Here we provide an overview of the limitations and potentials … However, the uncertainty
around divergence times obtained … evolutionary timescale by rescaling the relative-time patches …

Inferring evolutionary timescales without independent timing information: An assessment of “universal” insect rates to calibrate a collembola (Hexapoda) molecular …

AD Katz - Genes, 2020 - mdpi.com
… A major limitation of this approach is that rates can vary … of mean rates and standard error)
which lack 95% highest … that, despite the low precision associated with estimates from this …

Performance of a priori and a posteriori calibration strategies in divergence time estimation

AJS Beavan, PCJ Donoghue… - Genome biology and …, 2020 - academic.oup.com
… Relative divergence times and absolute timescales derived … ensure accuracy of calibrations
at the expense of precision. … bounds should be applied, even if the degree of precision that …

The molecular clock as a tool for understanding host-parasite evolution

RCM Warnock, J Engelstädter - The Evolution and Fossil Record of …, 2021 - Springer
… However, we also describe a case study in which the timescale of … and there is a limit to the
precision that can be achieved … incorporate uncertainty in the tree topology, divergence times

Calibrations from the fossil record

JMT Nguyen, SYW Ho - The molecular evolutionary clock: theory and …, 2020 - Springer
… clocks can be used to reconstruct evolutionary timescales … Our chapter concludes with a
discussion of the limitations of … There was some uncertainty in the timing of this divergence event…