… thaliana that is based on its chromosome number, genome size and gene copy number
has been revisited. A. thaliana, like many other paleopolyploid species (or ancient polyploids), …

… , with 15 % of speciation events in angiosperms related to ploidy … detailed synteny and
phylogenetic analysis of pineapple and … tools, have facilitated research in plant genome evolution. …

… of gene duplicates from multiple ancient WGD events on the major branches of angiosperm
phylogeny, … Duplicated genes co-retained from three waves of independent WGDs (∼120 …

… are common in plant genome evolution. We analyzed the genomes of three Solanaceae …
According to the phylogenetic tree of cluster 1, we found that all tomato genes clustered with …

… Our phylogenetic analysis resulted in a well-supported … of all angiosperms 16 , we conducted
a Bayesian Analysis of … utilizing entire genomic information 57 , and thereby unravel the …

… genome evolution dynamics and phylogeny. Indeed, microsynteny—the conservation of local
gene … (see Methods) followed by phylogenetic tree reconstruction for each orthogroup. In …

… analysis based on high-quality chromosome-level genomes, we develop a Python-based
command-line toolkit called WGDI (Whole-Genome Duplication Integrated analysis). … -genomic …

… present chromosome-scale genomes of the mangrove tree … To elucidate the role of ploidy
changes in genome evolution, … phylogenetic tree, incorporating 42 sequenced angiosperms …

… A sufficiently resolved phylogenetic tree would provide a basis for studying character … 1.09
%) gene duplication events were identified in our analysis. … Genomic evolution of liverworts …

… In addition, to test evolutionary hypothesis of significant gene … an ultrametric phylogenetic
tree depicting the evolutionary … genes from Moringa and 10 angiosperm species. (A) The ML …